| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
Click here to switch to the map view.
The map label for this gene is rhsD [C]
Identifier: 170022724
GI number: 170022724
Start: 518371
End: 521229
Strand: Reverse
Name: rhsD [C]
Synonym: YPK_0473
Alternate gene names: 170022724
Gene position: 521229-518371 (Counterclockwise)
Preceding gene: 170022725
Following gene: 170022714
Centisome position: 11.11
GC content: 48.51
Gene sequence:
>2859_bases ATGCCTAATACGTCACCCACTGATCTGTGCGCCAACACCCCCACTCTCACCATCCACGATAACCGGGGGTTAGCTATTCG CACACTGGCTTATAACCGCCGCAGTCATAATGAAACCGTTGACGAACTGATCAGCCGCAACCGCTATAACGCCTCCGGTC AGCTAATCGCCAGCCGCGACCCGCGCCTTGAGGTGGATAATTTCCGCTATCAATACAGCCTCAGCGGTGTTCCACTGCGT ACCGACAGCGTCGATAGCGGCAGTACGCTGCAACTGGCAGATAGTGCTGGCCGCACGGTGCTCACGCGGGATGCACACCA CACCCGCCGCTGGGTAGAGTATGAGACCGGTGAGCACAGTTTAGGCCGCCCGCTAAGTTACCGCGAGCAAGCCAAAGGCG GCCTGAAAACGGTTACTGACCGCTTTTTCTATGGCGAAAATAGCGAGCAGGATAAAGGCTGCAATCTGAACGGCCAGTGT GTCCGCCATTACGACAGCGCCGGTTTACAGGCACTGATTAGCCAGTCAATTATTGATGTGCCGCTGCAACAGCAGCGCCG TCTACTGACGGAGACTAAAGGCCCGGTTGACTGGTTTGGCGAGAAGGAGAACTGGGGCGCTCGCCTGAGTGAATCGCCGT TTGTTAGCCATTGCACCACCAATGCTCTCGGCCAGTTAATCACGCAAACCGATGCCAAAGGCCATATCCAGCGCATGGCC TATAACCGTGCCGGACAACTTATCGGTTCGTGGCTAACGGTAAAAAATGGCGTGGAGCAGCCCATTGTATACTCACTCAC CTATTCGGCTGCCGGGCAAAAACTGCGCGAAGAGAGCGGCAACGGGGTCATTACCGAATACCGTTATGAACCCCAGACTC AGCGCTTAATCGGCATTAAAACCACCCGCCCGGCGAAGAAAGACCGCCCGACCCGGTTACAAGACCTGCGTTACGATTAT GACCCGGTCGGGAATATTCTCGCCATCCATAATGACGCCGAAGCCACCCGCTTCTACCGTAATCAGAAAATCGTGCCGGA AACCACTTACCGCTACGATGCACTGTACCAGCTTATCGAGGCCACTGGCCGTGAAGCCGATACCAACGGCATACAAAACA GCCAGTTGCCCACGCTGGCGTCACTGAACGACAGCAACCAGTTCGTCAATTACACCCGCCACTACCACTATGACCGCGCC GGTAACCTGCTAAAAATTCAGCACACAGGAGCCAGCCAATACAGTACCTATATCACGGTGTCCGATTCGTCCAATCATGG CATTCAGCAACAAGATGGCATCACCGCCCATGATGTCCGCTCCCAGTTTGATACGGCGGGTAATCAGCGACAACTGCAAC CCGGTCAACTCCTTCACTGGAACAGCCGCAATCAGTTACAGCAAGTGGAGCCCGTGCCCCGCAACGACGGCATCAGTGAC AGCGAAAACTATCTCTATGATGGCAGCGGTAGCCGGGTGGTCAAAATCAGTCTCCATAAAACCCATAACGCCATCCAAAC CCGTTCAGTCATTTATTTAGCGGGACTGGAACTGCGTAGCCAATATAATGGCAATAATCTGACAGAAGATTTTCAGGTGA TGACCGTGGGTGCCGCGGGCCGTGCTCAGGTACGGGTATTACACTGGGAGCGCGGCCAACCCGTTGATATCGTCAATGAC CAACTGCGTTACAGTTTCGATAATCACCTTGGCTCGGCGTTAATCGAATTAGACAGCGACGGTGATATTATCAGCCAGGA AGAATATTACCCATTTGGCGGCACCGCGGTGTTAGCCTCCCGTAATACCGTGGAAGCTAAATATAAAACCGTTCGTTACT CCGGTAAAGAGCGTGACACCACCGGACTGTATTATTACGGTTACCGTTATTACCAGCCGTGGCTGGGCCGATGGTTAAGC GCCGACCCCGCAGGCACTATAGACGGGCTGAATTTATACCGAATGGTGAGGAATAACCCAATCAGATTGCGCGATAACAA TGGGCTGTTAACCGAAGAGCAAATTGATATGTACGTTAATTTGCTTAGTAATATTGGATTAAAAAATGATGATGAATTAA AGAGTGAACTATTAAGATATGGTTTGAGCGAAGAAGAGCAAGACCAGATATATTTAAATATGCCAATGTTTACGCAGTCT GGGTCATCAAGCTCATCAGCCACGTCCTTTTCTGAGAATAGTTCCAGTTCTGGGAGCACGCAAAGTGCTGATTCAGGTTA TCTCAGTCCAGTAAGAAACTATCATTTTTTTGAAGATATTAATTTAGTGACAATGCACCGCCCCTATCCAACAGAAAAAG TCTCTAGTGAAGAAATAATATCTGCTGCTGCAGAGCTAAAAGAAGCTAGCCCTATAGAAATTCTAATTGGTTTGGATTTG ACCAGTGAAAACCTCCATTCATATAAGTCAGCGCTTGCCGATGAAGGAATTGACTATATCACTAAAGAAAAATATGAAAT AAAGGATTTTTTTGAAGAAGGAGATTTATCGACTGAACAAATAGATCTGACAGTAAATGAAATATTAACATTACAAGAAA GTGCTATTGTTGGGGTTCATTGTGGCGCAGGTAATGGAAGAAGTGGAATTATTGCATCAGCATTAGCCATTAATAAGCTG TATGCAACAAATGAAGTAAGTAATTTTGATGCAACTCATCCATTGGGAGGAACAATGTTTGGGAACACAGATACATATCA GGTTGATATTGTAACAGCCAGTGCGGTTGGGATTATCAGAAAAACAAATCCTCAAGCAGTAGAGCGTAATGAGGATGTTT CTGCCTTATATGACTACTCCTATTTATTATATACAAGGCAACACTCAACATCATTGTAA
Upstream 100 bases:
>100_bases GTTGTAATGCCAACCGGGAGTCAGCGTTACGTTTTTTGCAACGATAGATTTCACAACGTTATATTTCACAACAGTAAATA ACTCGTTAAGGAATAATTTT
Downstream 100 bases:
>100_bases TTCATTAATTCTAGATACCTTCCCTATTTGAGTTGGGAAGGTATCTAGAACCATCATACTTATTTTTTAAAATCGCTGAT ACTAACAGCAGCATTGGCGA
Product: YD repeat-containing protein
Products: NA
Alternate protein names: Insecticidal xin Complex; Insecticidal xin Protein; Insecticidal xin Complex Protein; C Component Of Insecticidal xin Complex; Rhs Family Protein-Like Protein; YD Repeat Protein; Insecticidal xin; Zinc Finger C2H2-Type Domain-Containing Protein; FG-GAP Repeat Protein; Insecticidal xin SepC/Tcc Class; Insecticial xin; Integrins Alpha Chain; Insecticidal xin Complex-Like Protein; Insecticial xin Complex; Insecticidal xin SepC/TccC; Rhs Family Protein; Insecticidal xin Complex Protein TcaC; Insecticidal xin Complex TccC; Insecticidal xin Complex Protein Tccc
Number of amino acids: Translated: 952; Mature: 951
Protein sequence:
>952_residues MPNTSPTDLCANTPTLTIHDNRGLAIRTLAYNRRSHNETVDELISRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLR TDSVDSGSTLQLADSAGRTVLTRDAHHTRRWVEYETGEHSLGRPLSYREQAKGGLKTVTDRFFYGENSEQDKGCNLNGQC VRHYDSAGLQALISQSIIDVPLQQQRRLLTETKGPVDWFGEKENWGARLSESPFVSHCTTNALGQLITQTDAKGHIQRMA YNRAGQLIGSWLTVKNGVEQPIVYSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDY DPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPTLASLNDSNQFVNYTRHYHYDRA GNLLKIQHTGASQYSTYITVSDSSNHGIQQQDGITAHDVRSQFDTAGNQRQLQPGQLLHWNSRNQLQQVEPVPRNDGISD SENYLYDGSGSRVVKISLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVMTVGAAGRAQVRVLHWERGQPVDIVND QLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDTTGLYYYGYRYYQPWLGRWLS ADPAGTIDGLNLYRMVRNNPIRLRDNNGLLTEEQIDMYVNLLSNIGLKNDDELKSELLRYGLSEEEQDQIYLNMPMFTQS GSSSSSATSFSENSSSSGSTQSADSGYLSPVRNYHFFEDINLVTMHRPYPTEKVSSEEIISAAAELKEASPIEILIGLDL TSENLHSYKSALADEGIDYITKEKYEIKDFFEEGDLSTEQIDLTVNEILTLQESAIVGVHCGAGNGRSGIIASALAINKL YATNEVSNFDATHPLGGTMFGNTDTYQVDIVTASAVGIIRKTNPQAVERNEDVSALYDYSYLLYTRQHSTSL
Sequences:
>Translated_952_residues MPNTSPTDLCANTPTLTIHDNRGLAIRTLAYNRRSHNETVDELISRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLR TDSVDSGSTLQLADSAGRTVLTRDAHHTRRWVEYETGEHSLGRPLSYREQAKGGLKTVTDRFFYGENSEQDKGCNLNGQC VRHYDSAGLQALISQSIIDVPLQQQRRLLTETKGPVDWFGEKENWGARLSESPFVSHCTTNALGQLITQTDAKGHIQRMA YNRAGQLIGSWLTVKNGVEQPIVYSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDY DPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPTLASLNDSNQFVNYTRHYHYDRA GNLLKIQHTGASQYSTYITVSDSSNHGIQQQDGITAHDVRSQFDTAGNQRQLQPGQLLHWNSRNQLQQVEPVPRNDGISD SENYLYDGSGSRVVKISLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVMTVGAAGRAQVRVLHWERGQPVDIVND QLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDTTGLYYYGYRYYQPWLGRWLS ADPAGTIDGLNLYRMVRNNPIRLRDNNGLLTEEQIDMYVNLLSNIGLKNDDELKSELLRYGLSEEEQDQIYLNMPMFTQS GSSSSSATSFSENSSSSGSTQSADSGYLSPVRNYHFFEDINLVTMHRPYPTEKVSSEEIISAAAELKEASPIEILIGLDL TSENLHSYKSALADEGIDYITKEKYEIKDFFEEGDLSTEQIDLTVNEILTLQESAIVGVHCGAGNGRSGIIASALAINKL YATNEVSNFDATHPLGGTMFGNTDTYQVDIVTASAVGIIRKTNPQAVERNEDVSALYDYSYLLYTRQHSTSL >Mature_951_residues PNTSPTDLCANTPTLTIHDNRGLAIRTLAYNRRSHNETVDELISRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLRT DSVDSGSTLQLADSAGRTVLTRDAHHTRRWVEYETGEHSLGRPLSYREQAKGGLKTVTDRFFYGENSEQDKGCNLNGQCV RHYDSAGLQALISQSIIDVPLQQQRRLLTETKGPVDWFGEKENWGARLSESPFVSHCTTNALGQLITQTDAKGHIQRMAY NRAGQLIGSWLTVKNGVEQPIVYSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDYD PVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPTLASLNDSNQFVNYTRHYHYDRAG NLLKIQHTGASQYSTYITVSDSSNHGIQQQDGITAHDVRSQFDTAGNQRQLQPGQLLHWNSRNQLQQVEPVPRNDGISDS ENYLYDGSGSRVVKISLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVMTVGAAGRAQVRVLHWERGQPVDIVNDQ LRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDTTGLYYYGYRYYQPWLGRWLSA DPAGTIDGLNLYRMVRNNPIRLRDNNGLLTEEQIDMYVNLLSNIGLKNDDELKSELLRYGLSEEEQDQIYLNMPMFTQSG SSSSSATSFSENSSSSGSTQSADSGYLSPVRNYHFFEDINLVTMHRPYPTEKVSSEEIISAAAELKEASPIEILIGLDLT SENLHSYKSALADEGIDYITKEKYEIKDFFEEGDLSTEQIDLTVNEILTLQESAIVGVHCGAGNGRSGIIASALAINKLY ATNEVSNFDATHPLGGTMFGNTDTYQVDIVTASAVGIIRKTNPQAVERNEDVSALYDYSYLLYTRQHSTSL
Specific function: Rhs Elements Have A Nonessential Function. They May Play An Important Role In The Natural Ecology Of The Cell. [C]
COG id: COG3209
COG function: function code M; Rhs family protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 106863; Mature: 106732
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS00383 TYR_PHOSPHATASE_1 ; PS50056 TYR_PHOSPHATASE_2 ; PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNTSPTDLCANTPTLTIHDNRGLAIRTLAYNRRSHNETVDELISRNRYNASGQLIASRD CCCCCCCHHHCCCCEEEEECCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEECCC PRLEVDNFRYQYSLSGVPLRTDSVDSGSTLQLADSAGRTVLTRDAHHTRRWVEYETGEHS CCEEECCEEEEEEECCCEEECCCCCCCCEEEEECCCCCEEEECCCHHHHHEEEECCCCCC LGRPLSYREQAKGGLKTVTDRFFYGENSEQDKGCNLNGQCVRHYDSAGLQALISQSIIDV CCCCCCHHHHHCCCHHHHHHHEEECCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHCC PLQQQRRLLTETKGPVDWFGEKENWGARLSESPFVSHCTTNALGQLITQTDAKGHIQRMA CHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH YNRAGQLIGSWLTVKNGVEQPIVYSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIK HHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE TTRPAKKDRPTRLQDLRYDYDPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIE CCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHH ATGREADTNGIQNSQLPTLASLNDSNQFVNYTRHYHYDRAGNLLKIQHTGASQYSTYITV HCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHEEECCCCCEEEEEECCCCCEEEEEEE SDSSNHGIQQQDGITAHDVRSQFDTAGNQRQLQPGQLLHWNSRNQLQQVEPVPRNDGISD ECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCC SENYLYDGSGSRVVKISLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVMTVGAAG CCCEEECCCCCEEEEEEEECCCCHHHHCEEEEEECCHHHHCCCCCCCCCCEEEEEECCCC RAQVRVLHWERGQPVDIVNDQLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLAS CEEEEEEEECCCCCCHHHCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEEEC RNTVEAKYKTVRYSGKERDTTGLYYYGYRYYQPWLGRWLSADPAGTIDGLNLYRMVRNNP CCCCEEEEEEEEECCCCCCCCEEEEEEEEEECHHHHHHCCCCCCCCCCCHHHHHHHCCCC IRLRDNNGLLTEEQIDMYVNLLSNIGLKNDDELKSELLRYGLSEEEQDQIYLNMPMFTQS EEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEECC GSSSSSATSFSENSSSSGSTQSADSGYLSPVRNYHFFEDINLVTMHRPYPTEKVSSEEII CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCEEEEECCCCCCCCCHHHHH SAAAELKEASPIEILIGLDLTSENLHSYKSALADEGIDYITKEKYEIKDFFEEGDLSTEQ HHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCCEE IDLTVNEILTLQESAIVGVHCGAGNGRSGIIASALAINKLYATNEVSNFDATHPLGGTMF EEEEHHHHHEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEC GNTDTYQVDIVTASAVGIIRKTNPQAVERNEDVSALYDYSYLLYTRQHSTSL CCCCEEEEEEEEECEEEEEECCCCHHHCCCCCHHHHCCCEEEEEEECCCCCC >Mature Secondary Structure PNTSPTDLCANTPTLTIHDNRGLAIRTLAYNRRSHNETVDELISRNRYNASGQLIASRD CCCCCCHHHCCCCEEEEECCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEECCC PRLEVDNFRYQYSLSGVPLRTDSVDSGSTLQLADSAGRTVLTRDAHHTRRWVEYETGEHS CCEEECCEEEEEEECCCEEECCCCCCCCEEEEECCCCCEEEECCCHHHHHEEEECCCCCC LGRPLSYREQAKGGLKTVTDRFFYGENSEQDKGCNLNGQCVRHYDSAGLQALISQSIIDV CCCCCCHHHHHCCCHHHHHHHEEECCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHCC PLQQQRRLLTETKGPVDWFGEKENWGARLSESPFVSHCTTNALGQLITQTDAKGHIQRMA CHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH YNRAGQLIGSWLTVKNGVEQPIVYSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIK HHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE TTRPAKKDRPTRLQDLRYDYDPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIE CCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHH ATGREADTNGIQNSQLPTLASLNDSNQFVNYTRHYHYDRAGNLLKIQHTGASQYSTYITV HCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHEEECCCCCEEEEEECCCCCEEEEEEE SDSSNHGIQQQDGITAHDVRSQFDTAGNQRQLQPGQLLHWNSRNQLQQVEPVPRNDGISD ECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCC SENYLYDGSGSRVVKISLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVMTVGAAG CCCEEECCCCCEEEEEEEECCCCHHHHCEEEEEECCHHHHCCCCCCCCCCEEEEEECCCC RAQVRVLHWERGQPVDIVNDQLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLAS CEEEEEEEECCCCCCHHHCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEEEC RNTVEAKYKTVRYSGKERDTTGLYYYGYRYYQPWLGRWLSADPAGTIDGLNLYRMVRNNP CCCCEEEEEEEEECCCCCCCCEEEEEEEEEECHHHHHHCCCCCCCCCCCHHHHHHHCCCC IRLRDNNGLLTEEQIDMYVNLLSNIGLKNDDELKSELLRYGLSEEEQDQIYLNMPMFTQS EEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEECC GSSSSSATSFSENSSSSGSTQSADSGYLSPVRNYHFFEDINLVTMHRPYPTEKVSSEEII CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCEEEEECCCCCCCCCHHHHH SAAAELKEASPIEILIGLDLTSENLHSYKSALADEGIDYITKEKYEIKDFFEEGDLSTEQ HHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCCEE IDLTVNEILTLQESAIVGVHCGAGNGRSGIIASALAINKLYATNEVSNFDATHPLGGTMF EEEEHHHHHEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEC GNTDTYQVDIVTASAVGIIRKTNPQAVERNEDVSALYDYSYLLYTRQHSTSL CCCCEEEEEEEEECEEEEEECCCCHHHCCCCCHHHHCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA