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The map label for this gene is deoC [H]

Identifier: 170022671

GI number: 170022671

Start: 458147

End: 458848

Strand: Reverse

Name: deoC [H]

Synonym: YPK_0418

Alternate gene names: 170022671

Gene position: 458848-458147 (Counterclockwise)

Preceding gene: 170022676

Following gene: 170022670

Centisome position: 9.78

GC content: 48.29

Gene sequence:

>702_bases
ATGATTGATTTCAATGATCCCCGCCAGGTTGCGAAGGCTATTCAGTTCACCAACGTCAATGCCGATTTAACTCGGGAAGG
GGTGATTAAGCACTTAAACATTTGCCTGGAGTATCAATTCGATGCCGCCATGATCGCCCCTTGCTGGGTCTCTCTGGCTA
AAGACGTGCTGAAAGGTAGCGGTGTACGAGTGGCAACAACCGTCAACTTCCCACAAGCCAATGACACCACCGCGATGAAA
GTCGCCATCGTGAGAGAGCTTGCGAAAGAAGGTGCCGACGAGTTCGACTTCCCACCAAACCCAGGCTTTTTACTGGGTGG
GCTGGATGAACTCTATTTTAACGAACTGAAAGAAGTCACCCATATCGCCCATGATCTGGGAATGAAAGTAAAGGCGATGC
TGGAATTCGGTTTTATTACCGAGGAAGCCATGAAAATCAAAGCCACACGTTATGCATACGAAGCGGGAATTGATTGGGTG
AAACAATCTAGTGGCTGGGGTAAAGGCGGATGCGCAGCAACAGTAGAAGATGTTCAACTTCTCAAAGCCAATATTCAAGC
GCCTTGCCGTGTCAAAGTTTCAGGTAAAGTCAATACGTTAGAGAAGATGAAAGAGATGTTCCTTGCCGGTGCCGAGCTGG
TTGGTACTAGCTCCGGCCCTGAACTGGTGAAAGGACTAACTGGCGACATTAACGCTTATTAA

Upstream 100 bases:

>100_bases
TACACAGCTACCTATACGTAGTGACATACATATAGCTACATACACGTAGTGACATACACATCGCTACATGCGCTTATTTA
GCAAACAGGAGTATAAGTAA

Downstream 100 bases:

>100_bases
TCACTGAGTACCGCCGTAGACACTTTGTCAGTAACCGCAGTATCGCCGTAAACGGGGGTACTGCTGCTAGACAAATGAAT
AACAAATAGACTATGCAAAT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MIDFNDPRQVAKAIQFTNVNADLTREGVIKHLNICLEYQFDAAMIAPCWVSLAKDVLKGSGVRVATTVNFPQANDTTAMK
VAIVRELAKEGADEFDFPPNPGFLLGGLDELYFNELKEVTHIAHDLGMKVKAMLEFGFITEEAMKIKATRYAYEAGIDWV
KQSSGWGKGGCAATVEDVQLLKANIQAPCRVKVSGKVNTLEKMKEMFLAGAELVGTSSGPELVKGLTGDINAY

Sequences:

>Translated_233_residues
MIDFNDPRQVAKAIQFTNVNADLTREGVIKHLNICLEYQFDAAMIAPCWVSLAKDVLKGSGVRVATTVNFPQANDTTAMK
VAIVRELAKEGADEFDFPPNPGFLLGGLDELYFNELKEVTHIAHDLGMKVKAMLEFGFITEEAMKIKATRYAYEAGIDWV
KQSSGWGKGGCAATVEDVQLLKANIQAPCRVKVSGKVNTLEKMKEMFLAGAELVGTSSGPELVKGLTGDINAY
>Mature_233_residues
MIDFNDPRQVAKAIQFTNVNADLTREGVIKHLNICLEYQFDAAMIAPCWVSLAKDVLKGSGVRVATTVNFPQANDTTAMK
VAIVRELAKEGADEFDFPPNPGFLLGGLDELYFNELKEVTHIAHDLGMKVKAMLEFGFITEEAMKIKATRYAYEAGIDWV
KQSSGWGKGGCAATVEDVQLLKANIQAPCRVKVSGKVNTLEKMKEMFLAGAELVGTSSGPELVKGLTGDINAY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790841, Length=219, Percent_Identity=28.310502283105, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 25395; Mature: 25395

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFNDPRQVAKAIQFTNVNADLTREGVIKHLNICLEYQFDAAMIAPCWVSLAKDVLKGS
CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHCCC
GVRVATTVNFPQANDTTAMKVAIVRELAKEGADEFDFPPNPGFLLGGLDELYFNELKEVT
CEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHH
HIAHDLGMKVKAMLEFGFITEEAMKIKATRYAYEAGIDWVKQSSGWGKGGCAATVEDVQL
HHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LKANIQAPCRVKVSGKVNTLEKMKEMFLAGAELVGTSSGPELVKGLTGDINAY
HHHCCCCCEEEEECCCHHHHHHHHHHHHHCHHHCCCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure
MIDFNDPRQVAKAIQFTNVNADLTREGVIKHLNICLEYQFDAAMIAPCWVSLAKDVLKGS
CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHCCC
GVRVATTVNFPQANDTTAMKVAIVRELAKEGADEFDFPPNPGFLLGGLDELYFNELKEVT
CEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHH
HIAHDLGMKVKAMLEFGFITEEAMKIKATRYAYEAGIDWVKQSSGWGKGGCAATVEDVQL
HHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LKANIQAPCRVKVSGKVNTLEKMKEMFLAGAELVGTSSGPELVKGLTGDINAY
HHHCCCCCEEEEECCCHHHHHHHHHHHHHCHHHCCCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA