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The map label for this gene is yhjD [H]

Identifier: 170022367

GI number: 170022367

Start: 125074

End: 126174

Strand: Reverse

Name: yhjD [H]

Synonym: YPK_0106

Alternate gene names: 170022367

Gene position: 126174-125074 (Counterclockwise)

Preceding gene: 170022372

Following gene: 170022366

Centisome position: 2.69

GC content: 47.32

Gene sequence:

>1101_bases
ATGCCGAACGCACCGAAAGATAAAGTCACACCACAGGTATCCAGTCAATCCACAGCCCCACTGGCTGTCGGGATTAAAAC
CGGCAAAAAAGCCATCTCTCATATGGCCCGCCTCAGTGATCGCATTAGAGCCTATCCCGCTATCGCCCATATTATTCGTG
CAACAGATCGTTTTAATGACCGGTTAGGGAGCCAATTCGGTGCCGCGATTACTTACTTTTCATTTTTGTCACTGATCCCC
ATTTTGATGGTCTCTTTTGCTATGGTCGGTTTTGTATTAGCGTCAAATCCCGATCTGTTGGCTGAATTAATTAACAAAAT
TGTGAATAGCATCAGTGACCCGGCACTGGCCACCACACTTAAAAATACGGTGAATACCGCAATCCAGCAACGCACCACCG
TTGGGCTGACCGGCTTAGCCATTGCGCTTTATTCCGGGATCAGTTGGATAGGGAACCTGCGCGAAGCGATTCGGGCGCAA
TCACGTGATGTCTGGGAACGTAATCCGCAAGATAAGGAAAAATTCTATTACCGCTATGCCCGGGATTTTATCTCACTGAT
TGGGTTAGTGGTGGCGTTGATTATCACACTCTCACTGACCTCCATTGCCGGTGCTGCCCAAGCGGCGATCGTCAATGCGT
TAGGTCTGGGGGGCATTGAATGGTTACGCCCAGCCATGACGTTAATCGCGCTATCAATTTCTATTGCCGCTAACTACCTG
TTATTTTTATGGATATTCTGGATATTACCGCGGAATAAGCCGAAGAAAAAAGCGCTGTTACGCGGAGCCCTCATTGCCGC
TATCGGTTTTGAAGTGATTAAATTTATCATGACCATGATGCTGCCGCGCCTCGCCAGTTCACCGTCTGGCGCAGCCTTTG
GCTCGGTGATTGGTTTAATGGCTTTCTTCTACTTTTTTGCCCGCCTAACCTTATTCTGTGCGGCTTGGATAGCCACTGCC
CATGATGTAGCGGACAACCGTGTTGAGGGCAAAGACATTATTGATGATAAAGACATTATTGAGGATAAAGACATTGAGGA
TAAAGATATTGAGGACCAAAACGTAGAAGACAAGAGTTTACCAACACGTGGAGAAAAGTAA

Upstream 100 bases:

>100_bases
GTCCGACTCTGCTATTATCAGCAAGCCATAAGTATTTTATGTCATATTTTGTAGAATAATCATCTGCATAAGGCATGGGT
TAAGGCCATCGAGGAAAAAT

Downstream 100 bases:

>100_bases
CTTATGATTATGAAAAAATCATCAGTGTCACGCTCAATAAAATGGCGTAGATACTTACTGACATTGCTGATCTTGATCAT
ACTGGCTGCAGGCCTGATTT

Product: ribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MPNAPKDKVTPQVSSQSTAPLAVGIKTGKKAISHMARLSDRIRAYPAIAHIIRATDRFNDRLGSQFGAAITYFSFLSLIP
ILMVSFAMVGFVLASNPDLLAELINKIVNSISDPALATTLKNTVNTAIQQRTTVGLTGLAIALYSGISWIGNLREAIRAQ
SRDVWERNPQDKEKFYYRYARDFISLIGLVVALIITLSLTSIAGAAQAAIVNALGLGGIEWLRPAMTLIALSISIAANYL
LFLWIFWILPRNKPKKKALLRGALIAAIGFEVIKFIMTMMLPRLASSPSGAAFGSVIGLMAFFYFFARLTLFCAAWIATA
HDVADNRVEGKDIIDDKDIIEDKDIEDKDIEDQNVEDKSLPTRGEK

Sequences:

>Translated_366_residues
MPNAPKDKVTPQVSSQSTAPLAVGIKTGKKAISHMARLSDRIRAYPAIAHIIRATDRFNDRLGSQFGAAITYFSFLSLIP
ILMVSFAMVGFVLASNPDLLAELINKIVNSISDPALATTLKNTVNTAIQQRTTVGLTGLAIALYSGISWIGNLREAIRAQ
SRDVWERNPQDKEKFYYRYARDFISLIGLVVALIITLSLTSIAGAAQAAIVNALGLGGIEWLRPAMTLIALSISIAANYL
LFLWIFWILPRNKPKKKALLRGALIAAIGFEVIKFIMTMMLPRLASSPSGAAFGSVIGLMAFFYFFARLTLFCAAWIATA
HDVADNRVEGKDIIDDKDIIEDKDIEDKDIEDQNVEDKSLPTRGEK
>Mature_365_residues
PNAPKDKVTPQVSSQSTAPLAVGIKTGKKAISHMARLSDRIRAYPAIAHIIRATDRFNDRLGSQFGAAITYFSFLSLIPI
LMVSFAMVGFVLASNPDLLAELINKIVNSISDPALATTLKNTVNTAIQQRTTVGLTGLAIALYSGISWIGNLREAIRAQS
RDVWERNPQDKEKFYYRYARDFISLIGLVVALIITLSLTSIAGAAQAAIVNALGLGGIEWLRPAMTLIALSISIAANYLL
FLWIFWILPRNKPKKKALLRGALIAAIGFEVIKFIMTMMLPRLASSPSGAAFGSVIGLMAFFYFFARLTLFCAAWIATAH
DVADNRVEGKDIIDDKDIIEDKDIEDKDIEDQNVEDKSLPTRGEK

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789939, Length=302, Percent_Identity=70.1986754966888, Blast_Score=446, Evalue=1e-127,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005274
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 40120; Mature: 39989

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNAPKDKVTPQVSSQSTAPLAVGIKTGKKAISHMARLSDRIRAYPAIAHIIRATDRFND
CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLGSQFGAAITYFSFLSLIPILMVSFAMVGFVLASNPDLLAELINKIVNSISDPALATTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
KNTVNTAIQQRTTVGLTGLAIALYSGISWIGNLREAIRAQSRDVWERNPQDKEKFYYRYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RDFISLIGLVVALIITLSLTSIAGAAQAAIVNALGLGGIEWLRPAMTLIALSISIAANYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LFLWIFWILPRNKPKKKALLRGALIAAIGFEVIKFIMTMMLPRLASSPSGAAFGSVIGLM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
AFFYFFARLTLFCAAWIATAHDVADNRVEGKDIIDDKDIIEDKDIEDKDIEDQNVEDKSL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC
PTRGEK
CCCCCC
>Mature Secondary Structure 
PNAPKDKVTPQVSSQSTAPLAVGIKTGKKAISHMARLSDRIRAYPAIAHIIRATDRFND
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLGSQFGAAITYFSFLSLIPILMVSFAMVGFVLASNPDLLAELINKIVNSISDPALATTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
KNTVNTAIQQRTTVGLTGLAIALYSGISWIGNLREAIRAQSRDVWERNPQDKEKFYYRYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RDFISLIGLVVALIITLSLTSIAGAAQAAIVNALGLGGIEWLRPAMTLIALSISIAANYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LFLWIFWILPRNKPKKKALLRGALIAAIGFEVIKFIMTMMLPRLASSPSGAAFGSVIGLM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
AFFYFFARLTLFCAAWIATAHDVADNRVEGKDIIDDKDIIEDKDIEDKDIEDQNVEDKSL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC
PTRGEK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]