| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is selA [H]
Identifier: 170022304
GI number: 170022304
Start: 46025
End: 47413
Strand: Direct
Name: selA [H]
Synonym: YPK_0042
Alternate gene names: 170022304
Gene position: 46025-47413 (Clockwise)
Preceding gene: 170022303
Following gene: 170022305
Centisome position: 0.98
GC content: 54.79
Gene sequence:
>1389_bases ATGAGCGCAGAACCACACCCATTATATCGCCAGTTACCGGCCATTGATCGCTTACTGAATGAGCCTGAAATGGCCCCTTT ATTGGCGGAGTATGGCCCCGTTCTTTTGGCCGATACCCTACGTCAATTACAGGCAGAAGCTCGTGAATATATCGGTCAAT TTCATACTCTGGCTGATTGGTGTGCGGACTGGCCTGCCGCTTTACGTCAACGATTGAATCAACGGCAACCCGCGTTAAAA CCTGTGTTTAATCTTACTGGCACGGTGCTGCACACCAATTTGGGCCGTGCACCGCTGGCAGAATCTGCTATCGCGGCGGT GACCGATGCCATGCGAAGTGCGGTCACCTTGGAATACTCCTTAGAGGGCGCGGGCCGTGGGCACCGTGATCGGGCTGTCG CCGATTTACTCTGTGCCCTGACCGGTGCGGAAGATGCCTGTATCGTCAATAACAATGCGGCGGCGGTCTTCTTGTTGTTA ACGGTCATGGCGGCGGGCAAGCAAGTCGTGGTCTCCCGTGGTGAACTGGTCGAGATTGGCGGTGCGTTTCGTATTCCTGA TGTCATGCGTCAGGCAGGGTGTGAGCTGGTCGAAGTGGGTACCACGAACCGAACACATCTGAAAGATTATCGGCAGGCCA TCAATGAAAATACGGGTCTGCTGATGAAAGTTCATACCAGCAATTACAGTATCGAGGGTTTCACGGCCGCAGTATCCGAA CAGCAACTGGCGGCATTGGGGCAAGAGTGTTCCATCCCGACCGCGACCGATTTAGGCAGTGGTTCGCTGGTGGATATGAC CCGTTACGGTTTACCCGCCGAGCCCATGCCACAACAGTTGATTGCGGCAGGCGTAGATTTAGTGACCTTCTCCGGTGATA AACTGTTAGGTGGGCCGCAAGCGGGGATCATTCTCGGTAAAAAACAGTGGATTGAGCGGTTACAGCAACATCCGCTGAAG CGAGCATTGCGGGCCGATAAAATGACACTGGCAGCTTTGGACGCCACCTTGCGCCTCTATCAGCAGCCAGATCGGTTGGT TGAACAACTGCCATCTCTGCGGCTACTGACCCGCCCCGCCTCAGAGATTGCCGCGTGTGCACAACGCCTGCTGGCCCCAC TGATTGCCTGTTATGGCACAGATTTCACTTTGGATATTGAATCATGTTGGTCACAAATTGGCAGTGGTTCGCTGCCGGTT GATCGCTTGCCCAGTTGGGCGCTGACGTTTACGCCTAAAGATGGGCGCGGTAGTACATTGGAAGCCTTAACGGCGCGTTG GCGCACACTGACGAAGCCGGTCATTGGTCGTGTGGCTGATGGGCGTTTGTGGCTGGATTTACGCTGTCTGGAGGATGAGG CGGCGTTGCTAAGGGAATTGGCATCATGA
Upstream 100 bases:
>100_bases TAAGGTCAATGACCAATCAGTGATGGGGGTGAGGGCAATCAACGCACAGGCAACTCGACGTATGGCGGGTATATCGTTTA ATTAATTTGTTTGAGTGACT
Downstream 100 bases:
>100_bases TTATTGTCACCGCAGGCCATGTCGATCATGGCAAAACCACACTTTTACAGGCCATTACCGGGGTCAATGCGGATCGGTTG CCGGAAGAGAAGCAGCGGGG
Product: selenocysteine synthase
Products: NA
Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase [H]
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MSAEPHPLYRQLPAIDRLLNEPEMAPLLAEYGPVLLADTLRQLQAEAREYIGQFHTLADWCADWPAALRQRLNQRQPALK PVFNLTGTVLHTNLGRAPLAESAIAAVTDAMRSAVTLEYSLEGAGRGHRDRAVADLLCALTGAEDACIVNNNAAAVFLLL TVMAAGKQVVVSRGELVEIGGAFRIPDVMRQAGCELVEVGTTNRTHLKDYRQAINENTGLLMKVHTSNYSIEGFTAAVSE QQLAALGQECSIPTATDLGSGSLVDMTRYGLPAEPMPQQLIAAGVDLVTFSGDKLLGGPQAGIILGKKQWIERLQQHPLK RALRADKMTLAALDATLRLYQQPDRLVEQLPSLRLLTRPASEIAACAQRLLAPLIACYGTDFTLDIESCWSQIGSGSLPV DRLPSWALTFTPKDGRGSTLEALTARWRTLTKPVIGRVADGRLWLDLRCLEDEAALLRELAS
Sequences:
>Translated_462_residues MSAEPHPLYRQLPAIDRLLNEPEMAPLLAEYGPVLLADTLRQLQAEAREYIGQFHTLADWCADWPAALRQRLNQRQPALK PVFNLTGTVLHTNLGRAPLAESAIAAVTDAMRSAVTLEYSLEGAGRGHRDRAVADLLCALTGAEDACIVNNNAAAVFLLL TVMAAGKQVVVSRGELVEIGGAFRIPDVMRQAGCELVEVGTTNRTHLKDYRQAINENTGLLMKVHTSNYSIEGFTAAVSE QQLAALGQECSIPTATDLGSGSLVDMTRYGLPAEPMPQQLIAAGVDLVTFSGDKLLGGPQAGIILGKKQWIERLQQHPLK RALRADKMTLAALDATLRLYQQPDRLVEQLPSLRLLTRPASEIAACAQRLLAPLIACYGTDFTLDIESCWSQIGSGSLPV DRLPSWALTFTPKDGRGSTLEALTARWRTLTKPVIGRVADGRLWLDLRCLEDEAALLRELAS >Mature_461_residues SAEPHPLYRQLPAIDRLLNEPEMAPLLAEYGPVLLADTLRQLQAEAREYIGQFHTLADWCADWPAALRQRLNQRQPALKP VFNLTGTVLHTNLGRAPLAESAIAAVTDAMRSAVTLEYSLEGAGRGHRDRAVADLLCALTGAEDACIVNNNAAAVFLLLT VMAAGKQVVVSRGELVEIGGAFRIPDVMRQAGCELVEVGTTNRTHLKDYRQAINENTGLLMKVHTSNYSIEGFTAAVSEQ QLAALGQECSIPTATDLGSGSLVDMTRYGLPAEPMPQQLIAAGVDLVTFSGDKLLGGPQAGIILGKKQWIERLQQHPLKR ALRADKMTLAALDATLRLYQQPDRLVEQLPSLRLLTRPASEIAACAQRLLAPLIACYGTDFTLDIESCWSQIGSGSLPVD RLPSWALTFTPKDGRGSTLEALTARWRTLTKPVIGRVADGRLWLDLRCLEDEAALLRELAS
Specific function: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis [H]
COG id: COG1921
COG function: function code E; Selenocysteine synthase [seryl-tRNASer selenium transferase]
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the selA family [H]
Homologues:
Organism=Escherichia coli, GI2367248, Length=461, Percent_Identity=69.1973969631237, Blast_Score=602, Evalue=1e-173,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR018319 - InterPro: IPR004534 [H]
Pfam domain/function: PF03841 SelA [H]
EC number: =2.9.1.1 [H]
Molecular weight: Translated: 50209; Mature: 50078
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAEPHPLYRQLPAIDRLLNEPEMAPLLAEYGPVLLADTLRQLQAEAREYIGQFHTLADW CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH CADWPAALRQRLNQRQPALKPVFNLTGTVLHTNLGRAPLAESAIAAVTDAMRSAVTLEYS HCCCHHHHHHHHHHCCCHHHHHHHCCHHHEECCCCCCCHHHHHHHHHHHHHHHHEEEEEE LEGAGRGHRDRAVADLLCALTGAEDACIVNNNAAAVFLLLTVMAAGKQVVVSRGELVEIG ECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCEEECCCCEEEEC GAFRIPDVMRQAGCELVEVGTTNRTHLKDYRQAINENTGLLMKVHTSNYSIEGFTAAVSE CCCCCHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHH QQLAALGQECSIPTATDLGSGSLVDMTRYGLPAEPMPQQLIAAGVDLVTFSGDKLLGGPQ HHHHHCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCC AGIILGKKQWIERLQQHPLKRALRADKMTLAALDATLRLYQQPDRLVEQLPSLRLLTRPA CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEHHCCH SEIAACAQRLLAPLIACYGTDFTLDIESCWSQIGSGSLPVDRLPSWALTFTPKDGRGSTL HHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCHH EALTARWRTLTKPVIGRVADGRLWLDLRCLEDEAALLRELAS HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHCC >Mature Secondary Structure SAEPHPLYRQLPAIDRLLNEPEMAPLLAEYGPVLLADTLRQLQAEAREYIGQFHTLADW CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH CADWPAALRQRLNQRQPALKPVFNLTGTVLHTNLGRAPLAESAIAAVTDAMRSAVTLEYS HCCCHHHHHHHHHHCCCHHHHHHHCCHHHEECCCCCCCHHHHHHHHHHHHHHHHEEEEEE LEGAGRGHRDRAVADLLCALTGAEDACIVNNNAAAVFLLLTVMAAGKQVVVSRGELVEIG ECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCEEECCCCEEEEC GAFRIPDVMRQAGCELVEVGTTNRTHLKDYRQAINENTGLLMKVHTSNYSIEGFTAAVSE CCCCCHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHH QQLAALGQECSIPTATDLGSGSLVDMTRYGLPAEPMPQQLIAAGVDLVTFSGDKLLGGPQ HHHHHCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCC AGIILGKKQWIERLQQHPLKRALRADKMTLAALDATLRLYQQPDRLVEQLPSLRLLTRPA CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEHHCCH SEIAACAQRLLAPLIACYGTDFTLDIESCWSQIGSGSLPVDRLPSWALTFTPKDGRGSTL HHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCHH EALTARWRTLTKPVIGRVADGRLWLDLRCLEDEAALLRELAS HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA