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The map label for this gene is pinQ [H]

Identifier: 170016311

GI number: 170016311

Start: 6836

End: 7399

Strand: Direct

Name: pinQ [H]

Synonym: LCK_p100004

Alternate gene names: 170016311

Gene position: 6836-7399 (Clockwise)

Preceding gene: 170016310

Following gene: 170016312

Centisome position: 17.66

GC content: 34.75

Gene sequence:

>564_bases
ATGAAATATGGCTATGCACGTGTAAGTACAAGTGATCAAAAATTGGAAAATCAGATTTCTATTCTGGAAGAAGCTGGTAC
TGAAAAAATTTATCAAGAAAAATTTACAGGAACAACAACTAAACGTCCAGAGTTTAAAAAATTAATCCAACAGCTAACGT
CTGGAGATATGTTGATTGTGACTAAGCTAGATCGCTTTGCTAGAAATACACGTGAAGCACTTGAAATTATTCAAGACTTA
TTTGAACGAGGAATCAAGGTTAATATATTAAACATGGGACTGATTGACAGTACACCAACTGGTCAGCTTATATTTACAAT
ATTTAGTGCATTTGCGCAATTTGAGCGTGATATGATCGTGACGCGTACCCAAGAAGGGAAAAATTATGCTAAGCAAAATG
ACCCGAACTTTAAGGAGGGGCGTCCAAAAACATATAGTGATGAACAGATTAATTTTGCTTATGAATTACGAGAACAGGGT
ATGACATACAAAATGATTTATCGAAAAACAGGTATCAGTATTCGGACACAACAAAGACGATATAGAGAGTTGAAGAAAGA
ATAG

Upstream 100 bases:

>100_bases
CTTAACAGTTGTGTCGCCTTTTTTTATAGCCTATAATTAAAGGGATTGTAGAGCGTCATAACTTAATGACGTAAGTGACA
GAGAAAATGAGGTTAGTACA

Downstream 100 bases:

>100_bases
AAAATACAAGTTTAGGTTTTATTAAAATGCTATCTGCTCTTATGCTAGATTTACGGACAGATTTTCTTCTGCCCTGTAAA
CTAATAGCATAGGAGCATTT

Product: site-specific recombinase, DNA invertase Pin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKYGYARVSTSDQKLENQISILEEAGTEKIYQEKFTGTTTKRPEFKKLIQQLTSGDMLIVTKLDRFARNTREALEIIQDL
FERGIKVNILNMGLIDSTPTGQLIFTIFSAFAQFERDMIVTRTQEGKNYAKQNDPNFKEGRPKTYSDEQINFAYELREQG
MTYKMIYRKTGISIRTQQRRYRELKKE

Sequences:

>Translated_187_residues
MKYGYARVSTSDQKLENQISILEEAGTEKIYQEKFTGTTTKRPEFKKLIQQLTSGDMLIVTKLDRFARNTREALEIIQDL
FERGIKVNILNMGLIDSTPTGQLIFTIFSAFAQFERDMIVTRTQEGKNYAKQNDPNFKEGRPKTYSDEQINFAYELREQG
MTYKMIYRKTGISIRTQQRRYRELKKE
>Mature_187_residues
MKYGYARVSTSDQKLENQISILEEAGTEKIYQEKFTGTTTKRPEFKKLIQQLTSGDMLIVTKLDRFARNTREALEIIQDL
FERGIKVNILNMGLIDSTPTGQLIFTIFSAFAQFERDMIVTRTQEGKNYAKQNDPNFKEGRPKTYSDEQINFAYELREQG
MTYKMIYRKTGISIRTQQRRYRELKKE

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787638, Length=174, Percent_Identity=37.3563218390805, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI1787827, Length=174, Percent_Identity=37.3563218390805, Blast_Score=117, Evalue=4e-28,
Organism=Escherichia coli, GI1787404, Length=131, Percent_Identity=41.9847328244275, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 21982; Mature: 21982

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGYARVSTSDQKLENQISILEEAGTEKIYQEKFTGTTTKRPEFKKLIQQLTSGDMLIV
CCCCCEECCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
TKLDRFARNTREALEIIQDLFERGIKVNILNMGLIDSTPTGQLIFTIFSAFAQFERDMIV
EHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHEE
TRTQEGKNYAKQNDPNFKEGRPKTYSDEQINFAYELREQGMTYKMIYRKTGISIRTQQRR
EECCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHCCCCEEHHHHH
YRELKKE
HHHHHCC
>Mature Secondary Structure
MKYGYARVSTSDQKLENQISILEEAGTEKIYQEKFTGTTTKRPEFKKLIQQLTSGDMLIV
CCCCCEECCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
TKLDRFARNTREALEIIQDLFERGIKVNILNMGLIDSTPTGQLIFTIFSAFAQFERDMIV
EHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHEE
TRTQEGKNYAKQNDPNFKEGRPKTYSDEQINFAYELREQGMTYKMIYRKTGISIRTQQRR
EECCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHCCCCEEHHHHH
YRELKKE
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]