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The map label for this gene is radC [C]

Identifier: 169834408

GI number: 169834408

Start: 1084855

End: 1085535

Strand: Direct

Name: radC [C]

Synonym: SPH_1181

Alternate gene names: 169834408

Gene position: 1084855-1085535 (Clockwise)

Preceding gene: 169832763

Following gene: 169833659

Centisome position: 48.31

GC content: 40.82

Gene sequence:

>681_bases
ATGTACAGTATTTCATTCCAAGAAGATTCACTATTACCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTTAGTAA
CCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGTCAAGCTAGCGTTTTTGAAATTGCCCAAAAAGTCTTGAACA
ATCTTTCAAGCCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGGCGTGTTAAGGCC
ATAGAATTACAAGCTATGATTGAACTGGGGCATCGTATTCACAAACACGAGACTCTTGAAATGGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAATTAGGGGATAAAAAACAAGAGCACCTGGTGGCACTCTATCTCAATACTC
AAAATCAAATCATCCATCAGCAGACCATTTTTATCGGTTCTGTAACTCGTAGTATCGCTGAACCGCGAGAGATTCTTCAC
TATGCAATCAAGCATATGGCGACTTCTCTTATCTTGGTCCACAATCATCCTTCAGGAGCGGTAGCGCCTAGCCAAAATGA
TGATCATGTCACTAAACTTGTTAAAGAAGCCTGCGAACTGATGGGGATTGTTCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACAGATTTAATCTAA

Upstream 100 bases:

>100_bases
AGAAGTAGGTTTGAAAAAACTTTTAGCCAGTGTGGCTCCAATTGAGAAAAAAATCTAATTTTCCATCCTTCTCACGAATA
ATAAAGTGAGGAGGATTTTT

Downstream 100 bases:

>100_bases
AGTTCATTAACGACATAGTCAAAGAGTTTTTTATCTTTGGGACGATTTTCAAAAAGAAGTTCTGGATGCCATTGGACACC
GAGAAAGGCGACATCATCCG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Sequences:

>Translated_226_residues
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI
>Mature_226_residues
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=212, Percent_Identity=34.4339622641509, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1788312, Length=100, Percent_Identity=42, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788997, Length=119, Percent_Identity=36.1344537815126, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI2367100, Length=119, Percent_Identity=33.6134453781513, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1009_STRPJ (B8ZPT5)

Other databases:

- EMBL:   FM211187
- RefSeq:   YP_002510982.1
- ProteinModelPortal:   B8ZPT5
- SMR:   B8ZPT5
- EnsemblBacteria:   EBSTRT00000072784
- GeneID:   7328461
- GenomeReviews:   FM211187_GR
- GeneTree:   EBGT00050000027779
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25536; Mature: 25536

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTD
CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LKKMTLQELQSLSGIGRVKAIELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGD
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILHYAIKHMATSLILVHNHPSGA
HHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCC
VAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTD
CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LKKMTLQELQSLSGIGRVKAIELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGD
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILHYAIKHMATSLILVHNHPSGA
HHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCC
VAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA