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The map label for this gene is yfeT [C]

Identifier: 169834086

GI number: 169834086

Start: 1645790

End: 1646641

Strand: Direct

Name: yfeT [C]

Synonym: SPH_1782

Alternate gene names: 169834086

Gene position: 1645790-1646641 (Clockwise)

Preceding gene: 169834510

Following gene: 169832842

Centisome position: 73.29

GC content: 41.31

Gene sequence:

>852_bases
ATGGACAAACCAGATATCGCAACTATCATTGATTCACATTTTGAAGAAATGACAGACCTAGAGCAAGAAATCGCTCGCTA
TTTTTTGCAAGCTGAAACGATTACAGATGATTTATCTTCTCAACAAGTCACCCAAAAATTACATATTTCTCAAGCTGCTT
TGACCCGCTTTGCTAAAAAGTGTGGCTTTACTGGCTACCGAGAATTTATTTTCCAATACCAACATCAGGCAGAAAATCAA
GCCAACCAAGTCTCCAAGCATAGTCCACTGACCAAACGAGTCCTCAGAAGTTATAGCAATATGAGGGAACAAACACAAGA
CTTGATTGACGAAATCCAACTAGAGCGAATTGCCCAGCTAATCGAAGATGCTGAGCGTATCTACTTCTTTGGAACAGGGA
GTTCTGGCCTCGTCGCCCGTGAAATGAAATTACGTTTTATGCGACTAGGTGTGGTCTGCGAAGCTTTGACAGACCAAGAC
GGCTTTGCCTGGACAACCAGCATCATGGATGAAAATTGTCTAGTACTGGGTTTCTCACTTTCAGGCTCAACTCCTTCTAT
TTTAGATAGTCTATTAGATGCCAAGGAGATGGGGGCAAAGACTGTACTCTTTACAAGTGTTCCCAATAAAGATAGCCAGA
CCTATACAGAGACTGTTCTTGTAGCCACCCACAGCCAACCCTCCTACATCCAACGAATATCCGCTCAACTTCCTATGCTC
TTCTTTATCGATTTGATTTATGCCTACTTTTTGGAAATCAATCGCGAAAGCAAGGAAAAAATCTTTAATAGCTACTGGGA
AAATAAAAAACTCAACGGCTATCGTAGACAAAAACGTGTAAGAAAATCCTAG

Upstream 100 bases:

>100_bases
TGCGTTTTTATTTATCTATCCTTATATTATGTGTTATAATGAAGTGTGACTATTCCCTGATCTAGTCTTCCAGTATGACC
CATGTAAAGGAGCTTTCCCT

Downstream 100 bases:

>100_bases
TTTGGCTGAGCCAAACTAGGATTGTTTTGTCTTAAAATGATAATATGCACCCAACATCCCTGCTGTATTTTGGTGATGGG
CAAATTCTAATCGTGTTTTT

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MDKPDIATIIDSHFEEMTDLEQEIARYFLQAETITDDLSSQQVTQKLHISQAALTRFAKKCGFTGYREFIFQYQHQAENQ
ANQVSKHSPLTKRVLRSYSNMREQTQDLIDEIQLERIAQLIEDAERIYFFGTGSSGLVAREMKLRFMRLGVVCEALTDQD
GFAWTTSIMDENCLVLGFSLSGSTPSILDSLLDAKEMGAKTVLFTSVPNKDSQTYTETVLVATHSQPSYIQRISAQLPML
FFIDLIYAYFLEINRESKEKIFNSYWENKKLNGYRRQKRVRKS

Sequences:

>Translated_283_residues
MDKPDIATIIDSHFEEMTDLEQEIARYFLQAETITDDLSSQQVTQKLHISQAALTRFAKKCGFTGYREFIFQYQHQAENQ
ANQVSKHSPLTKRVLRSYSNMREQTQDLIDEIQLERIAQLIEDAERIYFFGTGSSGLVAREMKLRFMRLGVVCEALTDQD
GFAWTTSIMDENCLVLGFSLSGSTPSILDSLLDAKEMGAKTVLFTSVPNKDSQTYTETVLVATHSQPSYIQRISAQLPML
FFIDLIYAYFLEINRESKEKIFNSYWENKKLNGYRRQKRVRKS
>Mature_283_residues
MDKPDIATIIDSHFEEMTDLEQEIARYFLQAETITDDLSSQQVTQKLHISQAALTRFAKKCGFTGYREFIFQYQHQAENQ
ANQVSKHSPLTKRVLRSYSNMREQTQDLIDEIQLERIAQLIEDAERIYFFGTGSSGLVAREMKLRFMRLGVVCEALTDQD
GFAWTTSIMDENCLVLGFSLSGSTPSILDSLLDAKEMGAKTVLFTSVPNKDSQTYTETVLVATHSQPSYIQRISAQLPML
FFIDLIYAYFLEINRESKEKIFNSYWENKKLNGYRRQKRVRKS

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=219, Percent_Identity=30.5936073059361, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87082130, Length=278, Percent_Identity=23.7410071942446, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87082369, Length=250, Percent_Identity=22, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 32672; Mature: 32672

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKPDIATIIDSHFEEMTDLEQEIARYFLQAETITDDLSSQQVTQKLHISQAALTRFAKK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGFTGYREFIFQYQHQAENQANQVSKHSPLTKRVLRSYSNMREQTQDLIDEIQLERIAQL
HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEDAERIYFFGTGSSGLVAREMKLRFMRLGVVCEALTDQDGFAWTTSIMDENCLVLGFSL
HHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHCCCCEEEEEEEC
SGSTPSILDSLLDAKEMGAKTVLFTSVPNKDSQTYTETVLVATHSQPSYIQRISAQLPML
CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHEEEEEECCCHHHHHHHHHHCHHH
FFIDLIYAYFLEINRESKEKIFNSYWENKKLNGYRRQKRVRKS
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MDKPDIATIIDSHFEEMTDLEQEIARYFLQAETITDDLSSQQVTQKLHISQAALTRFAKK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGFTGYREFIFQYQHQAENQANQVSKHSPLTKRVLRSYSNMREQTQDLIDEIQLERIAQL
HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEDAERIYFFGTGSSGLVAREMKLRFMRLGVVCEALTDQDGFAWTTSIMDENCLVLGFSL
HHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHCCCCEEEEEEEC
SGSTPSILDSLLDAKEMGAKTVLFTSVPNKDSQTYTETVLVATHSQPSYIQRISAQLPML
CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHEEEEEECCCHHHHHHHHHHCHHH
FFIDLIYAYFLEINRESKEKIFNSYWENKKLNGYRRQKRVRKS
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]