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The map label for this gene is xylR [H]

Identifier: 169833686

GI number: 169833686

Start: 1793315

End: 1794493

Strand: Direct

Name: xylR [H]

Synonym: SPH_1930

Alternate gene names: 169833686

Gene position: 1793315-1794493 (Clockwise)

Preceding gene: 169834238

Following gene: 169833397

Centisome position: 79.86

GC content: 34.1

Gene sequence:

>1179_bases
ATGACCTTATCTAAGAAACAATTACAACTACGAGCTAAAATACTGGAAACAGTTTACACATTAGGTCCCATTTCACGAAT
TGAAATCGCTACTAAAACAGGAATAACACCTGCAACAACTAGCAGTATCACAAATGATCTGATTAAAGAAAACATTCTCT
TAGAACTTGGTGAAGACGAACACGATACAAGCGTAGGGAGAAAAAAAATCCTGCTAGACATTCAAGCTAAACGATTTTAC
TACATTGGTTGTGAACTATCTGAAAAACATTTCACTTTTGCTTTAGGAGATAATCTAGGAAATATCTTAAAGGAAGAGAA
AGAAATTGTTACTAAACAGTTAATCCAAGAAAAGGGAAATCAACTCATTAGCCAGACACTAAAGCAATTCTTAAATAACT
GCTCTGATTATGAAATAGAAGCAATTGGAATCGCGCTACCTGGTCGCTATTTAGATGATTATAAAATAACAACAAACAAT
CCTTTATGGCAACATATCGACTTAGAAATGATTCAATCCCACTTTGATAAGCCTTTGTTTTTCTCTAACAATGTTAACTG
TATGGCTATAGGTAAACGCCTATTTAGTCGCCAACAGAATGACCCTAATTTTGCTTATTTTCATTTTGCTAGAGGTATGC
ACTGTTCTTATATCTACGACGGAAACATTTATGGAAAAGGAAATCTAATGATTGGAGAAATAGGGCATACAGTTGTTTCA
TCTGAGGGAGAAGAATGTAGTTGCGGGCGCAAGGGATGCTTACAAACTTTTGCTGGAGAATCTTGGTTAATCAAAAAATC
AAAAATTCTATATCATCAATCTCCCTATTCTCTACTTCCTAGTTTAGTCAAAAATGCCGATGATATTGATATCCAAGTTA
TTTTAACCGCTTATCAATTAGGTGACACTGGAATAATCACACTTATCCATCAAGCCTTACTCTATCTTAGTCAAACCATT
TTAAATATCAGTATGATGATTGACTCTCAAAAAATCTACCTACATAGTCCTTTACTAACAAATCAACACATCATCCAAAA
ACTATATAGTGAAATGAACTACAAACCCAAACTGCTCTATAATCGCCTACCTGAAGTCATTATTGAACCTTACAATGATT
TTACAGCCGCACACTCAGCTATTGCACTTTGTTTGTATCATACAATTCTACATTCCTAA

Upstream 100 bases:

>100_bases
CCAGTAAGCAATGAAAAGCTTAAAAAGATTAACATCTACATTTATCCATAGCAAAAAATCATAGGATTTTAAGAATCTGA
CAACTAGGAAGAAAACTAAT

Downstream 100 bases:

>100_bases
TTTTCTATTACATTTAATAAATAGGCTAAAAAGAGGGAGTATATCATAAAAAGCGAACAAACCTGTTTTCTGAAAATCAG
AATTCTGTTTTGTTCGCTTT

Product: ROK family protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MTLSKKQLQLRAKILETVYTLGPISRIEIATKTGITPATTSSITNDLIKENILLELGEDEHDTSVGRKKILLDIQAKRFY
YIGCELSEKHFTFALGDNLGNILKEEKEIVTKQLIQEKGNQLISQTLKQFLNNCSDYEIEAIGIALPGRYLDDYKITTNN
PLWQHIDLEMIQSHFDKPLFFSNNVNCMAIGKRLFSRQQNDPNFAYFHFARGMHCSYIYDGNIYGKGNLMIGEIGHTVVS
SEGEECSCGRKGCLQTFAGESWLIKKSKILYHQSPYSLLPSLVKNADDIDIQVILTAYQLGDTGIITLIHQALLYLSQTI
LNISMMIDSQKIYLHSPLLTNQHIIQKLYSEMNYKPKLLYNRLPEVIIEPYNDFTAAHSAIALCLYHTILHS

Sequences:

>Translated_392_residues
MTLSKKQLQLRAKILETVYTLGPISRIEIATKTGITPATTSSITNDLIKENILLELGEDEHDTSVGRKKILLDIQAKRFY
YIGCELSEKHFTFALGDNLGNILKEEKEIVTKQLIQEKGNQLISQTLKQFLNNCSDYEIEAIGIALPGRYLDDYKITTNN
PLWQHIDLEMIQSHFDKPLFFSNNVNCMAIGKRLFSRQQNDPNFAYFHFARGMHCSYIYDGNIYGKGNLMIGEIGHTVVS
SEGEECSCGRKGCLQTFAGESWLIKKSKILYHQSPYSLLPSLVKNADDIDIQVILTAYQLGDTGIITLIHQALLYLSQTI
LNISMMIDSQKIYLHSPLLTNQHIIQKLYSEMNYKPKLLYNRLPEVIIEPYNDFTAAHSAIALCLYHTILHS
>Mature_391_residues
TLSKKQLQLRAKILETVYTLGPISRIEIATKTGITPATTSSITNDLIKENILLELGEDEHDTSVGRKKILLDIQAKRFYY
IGCELSEKHFTFALGDNLGNILKEEKEIVTKQLIQEKGNQLISQTLKQFLNNCSDYEIEAIGIALPGRYLDDYKITTNNP
LWQHIDLEMIQSHFDKPLFFSNNVNCMAIGKRLFSRQQNDPNFAYFHFARGMHCSYIYDGNIYGKGNLMIGEIGHTVVSS
EGEECSCGRKGCLQTFAGESWLIKKSKILYHQSPYSLLPSLVKNADDIDIQVILTAYQLGDTGIITLIHQALLYLSQTIL
NISMMIDSQKIYLHSPLLTNQHIIQKLYSEMNYKPKLLYNRLPEVIIEPYNDFTAAHSAIALCLYHTILHS

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=334, Percent_Identity=27.5449101796407, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787878, Length=323, Percent_Identity=21.9814241486068, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 44578; Mature: 44447

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSKKQLQLRAKILETVYTLGPISRIEIATKTGITPATTSSITNDLIKENILLELGEDE
CCCCHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHEEEECCCC
HDTSVGRKKILLDIQAKRFYYIGCELSEKHFTFALGDNLGNILKEEKEIVTKQLIQEKGN
CCHHCCCEEEEEEEEECEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
QLISQTLKQFLNNCSDYEIEAIGIALPGRYLDDYKITTNNPLWQHIDLEMIQSHFDKPLF
HHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEECCCCCHHHCCHHHHHHHCCCCEE
FSNNVNCMAIGKRLFSRQQNDPNFAYFHFARGMHCSYIYDGNIYGKGNLMIGEIGHTVVS
ECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCEEEECCCEEEECCCCHHHC
SEGEECSCGRKGCLQTFAGESWLIKKSKILYHQSPYSLLPSLVKNADDIDIQVILTAYQL
CCCCCCCCCHHHHHHHHCCCCEEEECCEEEEECCCHHHHHHHHCCCCCCEEEEEEEEEEC
GDTGIITLIHQALLYLSQTILNISMMIDSQKIYLHSPLLTNQHIIQKLYSEMNYKPKLLY
CCCHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEECCCCCCHHHHHHHHHHCCCCHHHHH
NRLPEVIIEPYNDFTAAHSAIALCLYHTILHS
HHCCHHEECCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLSKKQLQLRAKILETVYTLGPISRIEIATKTGITPATTSSITNDLIKENILLELGEDE
CCCHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHEEEECCCC
HDTSVGRKKILLDIQAKRFYYIGCELSEKHFTFALGDNLGNILKEEKEIVTKQLIQEKGN
CCHHCCCEEEEEEEEECEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
QLISQTLKQFLNNCSDYEIEAIGIALPGRYLDDYKITTNNPLWQHIDLEMIQSHFDKPLF
HHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEECCCCCHHHCCHHHHHHHCCCCEE
FSNNVNCMAIGKRLFSRQQNDPNFAYFHFARGMHCSYIYDGNIYGKGNLMIGEIGHTVVS
ECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCEEEECCCEEEECCCCHHHC
SEGEECSCGRKGCLQTFAGESWLIKKSKILYHQSPYSLLPSLVKNADDIDIQVILTAYQL
CCCCCCCCCHHHHHHHHCCCCEEEECCEEEEECCCHHHHHHHHCCCCCCEEEEEEEEEEC
GDTGIITLIHQALLYLSQTILNISMMIDSQKIYLHSPLLTNQHIIQKLYSEMNYKPKLLY
CCCHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEECCCCCCHHHHHHHHHHCCCCHHHHH
NRLPEVIIEPYNDFTAAHSAIALCLYHTILHS
HHCCHHEECCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]