Click here to switch to the map view.

The map label for this gene is yfmM [H]

Identifier: 169833571

GI number: 169833571

Start: 807030

End: 808571

Strand: Direct

Name: yfmM [H]

Synonym: SPH_0869

Alternate gene names: 169833571

Gene position: 807030-808571 (Clockwise)

Preceding gene: 169833365

Following gene: 169832621

Centisome position: 35.94

GC content: 43.97

Gene sequence:

>1542_bases
ATGAGTATTTTAGAAGTTAAAAATCTGAGTCACGGTTTTGGTGACCGTGCAATTTTTGAAGATGTGTCCTTCCGTCTCCT
CAAGGGAGAACATATCGGCCTGGTCGGTGCCAATGGTGAAGGAAAATCAACCTTTATGAGTATCGTGACTGGTAAAATGC
TGCCAGATGAAGGAAAGGTTGAGTGGTCCAAATATGTGACGGCTGGTTACTTGGATCAGCACTCTGTCCTTACTGAAAGA
CAGTCGGTGCGTGATGTTCTCCGTACGGCTTTTGATGAGCTTTTCAAAGCTGAAGCTCGTATCAATGACCTCTATATGGA
AATGGCTGAAGACGGTGCGGATGTTGATGCTCTCATGGAAGAAGTGGGAGAACTTCAAGACCGTCTGGAGAGTCGTGATT
TCTATATCTTGGATGCTAAGATTGACGAAGTAGCGCGTGCTCTTGGTATTATGGACTTTGGCATGGATACGGATGTAACT
TCTTTGTCAGGTGGGCAAAGAACCAAGGTGCTTTTGGCAAAACTTCTCCTTGAAAAGCCTGATATTTTGCTGTTGGACGA
GCCGACCAACTACTTGGATGCTGAGCATATTGATTGGCTCAAGCGCTATCTCCAAAACTATGAGAATGCCTTTGTTCTCA
TTTCGCACGATATTCCATTCCTCAATGACGTTATCAATATTGTCTATCATGTGGAAAATCAACAGCTGACGCGTTACTCT
GGTGACTACTACCAGTTCCAAGAAGTTTATGCTATGAAGAAATCTCAGCTAGAGGCAGCCTACGAACGCCAGCAGAAAGA
GATTGCAGACCTCAAGGACTTTGTGGCTCGTAATAAAGCCCGTGTTGCAACTCGTAATATGGCTATGTCTCGTCAAAAGA
AATTGGATAAGATGGATATTATCGAACTCCAAAGTGAGAAACCAAAACCATCCTTTGATTTCAAACCAGCTCGTACACCA
GGGCGCTTTATCTTCCAAGCCAAGAACTTGCAAATTGGTTACGACCGTCCTCTTACTAAGCCTTTAAATCTTACCTTCGA
ACGCAATCAAAAGGTTGCGATTATTGGTGCTAATGGTATTGGAAAAACAACTCTCTTGAAGAGTCTCTTGGGCATTATCT
CGCCAATCGCTGGGGAAGTGGAGCGTGGAGATTATTTAGAACTTGGTTATTTTGAGCAGGAAGTAGAAGGCGGTAATCGC
CAAACTCCTCTTGAAGCTGTCTGGAATGCCTTTCCTGCCCTTAATCAAGCAGAAGTCCGTGCAGCCCTTGCCCGTTGTGG
TTTGACAACCAAACATATTGAAAGCCAGATTCAAGTATTATCAGGGGGAGAGCAAGCCAAGGTTCGTTTCTGTCTCTTGA
TGAATCGTGAAAACAACGTTTTAGTGCTGGACGAGCCGACCAACCATTTGGATGTGGATGCAAAGGATGAGCTCAAACGC
GCTCTCAAAGAATACAGGGGATCTATCCTTATGGTCTGCCACGAGCCAGACTTTTATGAAGGTTGGATAGACCAAATATG
GGATTTTAATAATTTAACTTAA

Upstream 100 bases:

>100_bases
CGCGTCTTTGAGATTGATGATTTGTGGACCAACACTTTGGGTGGCTATCTGGCTTGGCTCCTTTATAAACGATTACATAA
AAACAAGATAAGGAATTAAA

Downstream 100 bases:

>100_bases
GAATGAGAGTAAAAGAAATACAGTACCGAATGTGGATACTGTATTTTTTTGGTTTTTAAGATTTAAAATCGTAGTCTTTC
ACCACTTCGATGCTGTCGAT

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 512

Protein sequence:

>513_residues
MSILEVKNLSHGFGDRAIFEDVSFRLLKGEHIGLVGANGEGKSTFMSIVTGKMLPDEGKVEWSKYVTAGYLDQHSVLTER
QSVRDVLRTAFDELFKAEARINDLYMEMAEDGADVDALMEEVGELQDRLESRDFYILDAKIDEVARALGIMDFGMDTDVT
SLSGGQRTKVLLAKLLLEKPDILLLDEPTNYLDAEHIDWLKRYLQNYENAFVLISHDIPFLNDVINIVYHVENQQLTRYS
GDYYQFQEVYAMKKSQLEAAYERQQKEIADLKDFVARNKARVATRNMAMSRQKKLDKMDIIELQSEKPKPSFDFKPARTP
GRFIFQAKNLQIGYDRPLTKPLNLTFERNQKVAIIGANGIGKTTLLKSLLGIISPIAGEVERGDYLELGYFEQEVEGGNR
QTPLEAVWNAFPALNQAEVRAALARCGLTTKHIESQIQVLSGGEQAKVRFCLLMNRENNVLVLDEPTNHLDVDAKDELKR
ALKEYRGSILMVCHEPDFYEGWIDQIWDFNNLT

Sequences:

>Translated_513_residues
MSILEVKNLSHGFGDRAIFEDVSFRLLKGEHIGLVGANGEGKSTFMSIVTGKMLPDEGKVEWSKYVTAGYLDQHSVLTER
QSVRDVLRTAFDELFKAEARINDLYMEMAEDGADVDALMEEVGELQDRLESRDFYILDAKIDEVARALGIMDFGMDTDVT
SLSGGQRTKVLLAKLLLEKPDILLLDEPTNYLDAEHIDWLKRYLQNYENAFVLISHDIPFLNDVINIVYHVENQQLTRYS
GDYYQFQEVYAMKKSQLEAAYERQQKEIADLKDFVARNKARVATRNMAMSRQKKLDKMDIIELQSEKPKPSFDFKPARTP
GRFIFQAKNLQIGYDRPLTKPLNLTFERNQKVAIIGANGIGKTTLLKSLLGIISPIAGEVERGDYLELGYFEQEVEGGNR
QTPLEAVWNAFPALNQAEVRAALARCGLTTKHIESQIQVLSGGEQAKVRFCLLMNRENNVLVLDEPTNHLDVDAKDELKR
ALKEYRGSILMVCHEPDFYEGWIDQIWDFNNLT
>Mature_512_residues
SILEVKNLSHGFGDRAIFEDVSFRLLKGEHIGLVGANGEGKSTFMSIVTGKMLPDEGKVEWSKYVTAGYLDQHSVLTERQ
SVRDVLRTAFDELFKAEARINDLYMEMAEDGADVDALMEEVGELQDRLESRDFYILDAKIDEVARALGIMDFGMDTDVTS
LSGGQRTKVLLAKLLLEKPDILLLDEPTNYLDAEHIDWLKRYLQNYENAFVLISHDIPFLNDVINIVYHVENQQLTRYSG
DYYQFQEVYAMKKSQLEAAYERQQKEIADLKDFVARNKARVATRNMAMSRQKKLDKMDIIELQSEKPKPSFDFKPARTPG
RFIFQAKNLQIGYDRPLTKPLNLTFERNQKVAIIGANGIGKTTLLKSLLGIISPIAGEVERGDYLELGYFEQEVEGGNRQ
TPLEAVWNAFPALNQAEVRAALARCGLTTKHIESQIQVLSGGEQAKVRFCLLMNRENNVLVLDEPTNHLDVDAKDELKRA
LKEYRGSILMVCHEPDFYEGWIDQIWDFNNLT

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=522, Percent_Identity=27.5862068965517, Blast_Score=202, Evalue=7e-52,
Organism=Homo sapiens, GI10947137, Length=519, Percent_Identity=28.7090558766859, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI27881506, Length=519, Percent_Identity=28.7090558766859, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI69354671, Length=514, Percent_Identity=30.9338521400778, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI10947135, Length=514, Percent_Identity=30.9338521400778, Blast_Score=197, Evalue=2e-50,
Organism=Escherichia coli, GI1787041, Length=505, Percent_Identity=34.0594059405941, Blast_Score=264, Evalue=8e-72,
Organism=Escherichia coli, GI1789751, Length=497, Percent_Identity=28.169014084507, Blast_Score=241, Evalue=6e-65,
Organism=Escherichia coli, GI2367384, Length=502, Percent_Identity=29.8804780876494, Blast_Score=232, Evalue=3e-62,
Organism=Escherichia coli, GI1787182, Length=530, Percent_Identity=28.3018867924528, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1788165, Length=183, Percent_Identity=30.6010928961749, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789593, Length=222, Percent_Identity=28.8288288288288, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI48994997, Length=220, Percent_Identity=25, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081709, Length=222, Percent_Identity=25.6756756756757, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17559834, Length=511, Percent_Identity=28.1800391389432, Blast_Score=206, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI17555318, Length=523, Percent_Identity=28.6806883365201, Blast_Score=202, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17553372, Length=524, Percent_Identity=30.3435114503817, Blast_Score=199, Evalue=2e-51,
Organism=Saccharomyces cerevisiae, GI6321121, Length=517, Percent_Identity=32.1083172147002, Blast_Score=234, Evalue=3e-62,
Organism=Saccharomyces cerevisiae, GI6320874, Length=505, Percent_Identity=31.0891089108911, Blast_Score=213, Evalue=4e-56,
Organism=Saccharomyces cerevisiae, GI6325030, Length=395, Percent_Identity=29.620253164557, Blast_Score=126, Evalue=9e-30,
Organism=Saccharomyces cerevisiae, GI6324314, Length=407, Percent_Identity=24.8157248157248, Blast_Score=117, Evalue=6e-27,
Organism=Saccharomyces cerevisiae, GI6323278, Length=406, Percent_Identity=23.8916256157635, Blast_Score=114, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24666836, Length=524, Percent_Identity=29.3893129770992, Blast_Score=222, Evalue=4e-58,
Organism=Drosophila melanogaster, GI24642252, Length=516, Percent_Identity=28.1007751937984, Blast_Score=204, Evalue=1e-52,
Organism=Drosophila melanogaster, GI18859989, Length=516, Percent_Identity=28.1007751937984, Blast_Score=204, Evalue=1e-52,
Organism=Drosophila melanogaster, GI24641342, Length=514, Percent_Identity=28.7937743190661, Blast_Score=201, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58455; Mature: 58324

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILEVKNLSHGFGDRAIFEDVSFRLLKGEHIGLVGANGEGKSTFMSIVTGKMLPDEGKV
CCCEECCCCCCCCCCHHHHHHHHHEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCC
EWSKYVTAGYLDQHSVLTERQSVRDVLRTAFDELFKAEARINDLYMEMAEDGADVDALME
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
EVGELQDRLESRDFYILDAKIDEVARALGIMDFGMDTDVTSLSGGQRTKVLLAKLLLEKP
HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
DILLLDEPTNYLDAEHIDWLKRYLQNYENAFVLISHDIPFLNDVINIVYHVENQQLTRYS
CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHEECCCCCHHCC
GDYYQFQEVYAMKKSQLEAAYERQQKEIADLKDFVARNKARVATRNMAMSRQKKLDKMDI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH
IELQSEKPKPSFDFKPARTPGRFIFQAKNLQIGYDRPLTKPLNLTFERNQKVAIIGANGI
HEECCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCEEEECCCEEEEEECCCC
GKTTLLKSLLGIISPIAGEVERGDYLELGYFEQEVEGGNRQTPLEAVWNAFPALNQAEVR
CHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHH
AALARCGLTTKHIESQIQVLSGGEQAKVRFCLLMNRENNVLVLDEPTNHLDVDAKDELKR
HHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHH
ALKEYRGSILMVCHEPDFYEGWIDQIWDFNNLT
HHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SILEVKNLSHGFGDRAIFEDVSFRLLKGEHIGLVGANGEGKSTFMSIVTGKMLPDEGKV
CCEECCCCCCCCCCHHHHHHHHHEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCC
EWSKYVTAGYLDQHSVLTERQSVRDVLRTAFDELFKAEARINDLYMEMAEDGADVDALME
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
EVGELQDRLESRDFYILDAKIDEVARALGIMDFGMDTDVTSLSGGQRTKVLLAKLLLEKP
HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
DILLLDEPTNYLDAEHIDWLKRYLQNYENAFVLISHDIPFLNDVINIVYHVENQQLTRYS
CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHEECCCCCHHCC
GDYYQFQEVYAMKKSQLEAAYERQQKEIADLKDFVARNKARVATRNMAMSRQKKLDKMDI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH
IELQSEKPKPSFDFKPARTPGRFIFQAKNLQIGYDRPLTKPLNLTFERNQKVAIIGANGI
HEECCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCEEEECCCEEEEEECCCC
GKTTLLKSLLGIISPIAGEVERGDYLELGYFEQEVEGGNRQTPLEAVWNAFPALNQAEVR
CHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHH
AALARCGLTTKHIESQIQVLSGGEQAKVRFCLLMNRENNVLVLDEPTNHLDVDAKDELKR
HHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHH
ALKEYRGSILMVCHEPDFYEGWIDQIWDFNNLT
HHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]