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The map label for this gene is ymfN [H]

Identifier: 169833564

GI number: 169833564

Start: 35009

End: 36721

Strand: Direct

Name: ymfN [H]

Synonym: SPH_0049

Alternate gene names: 169833564

Gene position: 35009-36721 (Clockwise)

Preceding gene: 169834011

Following gene: 169832937

Centisome position: 1.56

GC content: 39.81

Gene sequence:

>1713_bases
ATGGTTGAGATGAGATATTTTGATAAATATGCTCAGCTGGTCTACTCAGGGAAGATTCGTGTTTGTGAACTTACGATGAA
GTCGATTAAACGAGTAGAGAGGTACAAGGAACAATACATCTTTAAACAAGAAGAAGTTGACAAACGGATTGAGTTCATTG
AGGAAGAGTGCAGCAACACTAAAGGTCTTGCTGGAAAGTTACACTTGGCTTTGCCTCAGAAGGTCTGGCTAGAAACAACG
TGGGGTTTTTATCATACAGTTGAAGTTACAAAAACAGATCCCGATACACTTGAAGAATATAAAGATTTTGAAGAAAGGCG
TCTCATTCATGAGGTGCCTATTATTGTACCTCGTGGTACAGGAAAAACAACCCTTGGTTCTGCCATTGGTGAGGTTGGTC
AGATTATTGACGGTGAGTGGGGTGCTGATATTCAGCTTCTAGCTTACAGTCGTGAACAAGCTGGATATCTGTTTAATGCT
TCTAGAGCTATGCTGTCGAACGAAGAGAGCTTGCTACACTATATGCGTGAGGCTGACATACTACGGTCAACTAAACAAGG
TATCTTGTACGAGACAACTAATAGTCTTATGTCAATCAAGACTTCCGACTATGAAAGTCTTGATGGTACTAATGCTCACT
ACAATATTTTTGATGAAGTGCACACTTATGATGATGACTTCATCAAGGTTGTGAATGATGGTTCGAGTCGCAAGCGAAAA
AATTGGATAACCTGGTACATCTCCACCAATGGGACGAAACGGGACAAGCTTTTTGATAAGTATTACAACATCTGGGTAGA
TATTCTTGATGAAAAGATTGTCAATCATTCGGTCATGCCTTGGATTTATCAGCTGGATGATGTTTCTGAAATTCACAATC
CAGATATGTGGCAGAAAGCTATGCCTTTACTCGGTATAACGACTGAGAAGGAGACGATTGCCAAGGATATTGAAATGAGC
AAGAATGATCCAGCACAACAGGCTGAGCTGATGGCTAAAACATTTAATCTCCCTGTTAATAACTATCTTGCTTACTTCAG
TAATGAAGAGTGTAAGGGTTGGTTAGATAAGTTTGATAAGAGTTTGTTTGTCGGAAATGAGGAGAGGAGTGCTCGCTGTG
TGCTTGGTGTTGACTTGTCGGATGTCAATGACATTTGTTCGGTCTCATTTATGGTCGTGCGTGGCGAAGAGCGTCAGTAT
TTGAACAAGAAATTCATGCCACGTCATACGATTGAAGGACTTCCGAAAGAACTGAGGGACAAATACGCTGAGTGGGAGCT
TAGTGGACAGCTTCATGTTCATGAGTTGGACTACAATGATCAAGCTTATATCTTTGAAGAATTAAGGCAGTTTATGAGTG
AGAATAGAATCTTACCAGTTGCAGTCGGATATGACCGCTGGAATGCAAAAGAGCTTATCCGCTTAATTAATGACTACTAC
GGAGATATATGTCACGACATTCCACAAACGGTCAAGAGCTTATCCAATCCTTTAAAAGTGTATAAAGAAAAAGCTAAGAT
GGGGAAAATCATCTTTGACGATCCTGTGGCAACTTGGAACCACGCAAATGTTCGTGTCAAGATAGATGCGAATAACAATG
TATTTCCAAATAAAGAAAAAGCAAAAGAAAAGATTGACGTATTTGCTAGTCAGTTAGATGCTTTTATCTGCTACGAAAAT
TTCAAGGAAGACTTGAGTTATTACTTTGATTGA

Upstream 100 bases:

>100_bases
AAGTATCAAAAGCTAAACATGCAGATTATGTCAACGATTGAAAAGCAAAGTCCACAGGGTGATAGCCTCAAAGAAATGAT
TCAGGAGAAGTTGGCTCGAT

Downstream 100 bases:

>100_bases
GGTGAAGAATGAACAAATATATAAATAATTTAAGAGAGGTTTTTGCTAGGATTTTCAGACCAAGCAATAGAAAATCCACA
AGGACCTATTTACAAAGAAA

Product: putative phage terminase, large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 570

Protein sequence:

>570_residues
MVEMRYFDKYAQLVYSGKIRVCELTMKSIKRVERYKEQYIFKQEEVDKRIEFIEEECSNTKGLAGKLHLALPQKVWLETT
WGFYHTVEVTKTDPDTLEEYKDFEERRLIHEVPIIVPRGTGKTTLGSAIGEVGQIIDGEWGADIQLLAYSREQAGYLFNA
SRAMLSNEESLLHYMREADILRSTKQGILYETTNSLMSIKTSDYESLDGTNAHYNIFDEVHTYDDDFIKVVNDGSSRKRK
NWITWYISTNGTKRDKLFDKYYNIWVDILDEKIVNHSVMPWIYQLDDVSEIHNPDMWQKAMPLLGITTEKETIAKDIEMS
KNDPAQQAELMAKTFNLPVNNYLAYFSNEECKGWLDKFDKSLFVGNEERSARCVLGVDLSDVNDICSVSFMVVRGEERQY
LNKKFMPRHTIEGLPKELRDKYAEWELSGQLHVHELDYNDQAYIFEELRQFMSENRILPVAVGYDRWNAKELIRLINDYY
GDICHDIPQTVKSLSNPLKVYKEKAKMGKIIFDDPVATWNHANVRVKIDANNNVFPNKEKAKEKIDVFASQLDAFICYEN
FKEDLSYYFD

Sequences:

>Translated_570_residues
MVEMRYFDKYAQLVYSGKIRVCELTMKSIKRVERYKEQYIFKQEEVDKRIEFIEEECSNTKGLAGKLHLALPQKVWLETT
WGFYHTVEVTKTDPDTLEEYKDFEERRLIHEVPIIVPRGTGKTTLGSAIGEVGQIIDGEWGADIQLLAYSREQAGYLFNA
SRAMLSNEESLLHYMREADILRSTKQGILYETTNSLMSIKTSDYESLDGTNAHYNIFDEVHTYDDDFIKVVNDGSSRKRK
NWITWYISTNGTKRDKLFDKYYNIWVDILDEKIVNHSVMPWIYQLDDVSEIHNPDMWQKAMPLLGITTEKETIAKDIEMS
KNDPAQQAELMAKTFNLPVNNYLAYFSNEECKGWLDKFDKSLFVGNEERSARCVLGVDLSDVNDICSVSFMVVRGEERQY
LNKKFMPRHTIEGLPKELRDKYAEWELSGQLHVHELDYNDQAYIFEELRQFMSENRILPVAVGYDRWNAKELIRLINDYY
GDICHDIPQTVKSLSNPLKVYKEKAKMGKIIFDDPVATWNHANVRVKIDANNNVFPNKEKAKEKIDVFASQLDAFICYEN
FKEDLSYYFD
>Mature_570_residues
MVEMRYFDKYAQLVYSGKIRVCELTMKSIKRVERYKEQYIFKQEEVDKRIEFIEEECSNTKGLAGKLHLALPQKVWLETT
WGFYHTVEVTKTDPDTLEEYKDFEERRLIHEVPIIVPRGTGKTTLGSAIGEVGQIIDGEWGADIQLLAYSREQAGYLFNA
SRAMLSNEESLLHYMREADILRSTKQGILYETTNSLMSIKTSDYESLDGTNAHYNIFDEVHTYDDDFIKVVNDGSSRKRK
NWITWYISTNGTKRDKLFDKYYNIWVDILDEKIVNHSVMPWIYQLDDVSEIHNPDMWQKAMPLLGITTEKETIAKDIEMS
KNDPAQQAELMAKTFNLPVNNYLAYFSNEECKGWLDKFDKSLFVGNEERSARCVLGVDLSDVNDICSVSFMVVRGEERQY
LNKKFMPRHTIEGLPKELRDKYAEWELSGQLHVHELDYNDQAYIFEELRQFMSENRILPVAVGYDRWNAKELIRLINDYY
GDICHDIPQTVKSLSNPLKVYKEKAKMGKIIFDDPVATWNHANVRVKIDANNNVFPNKEKAKEKIDVFASQLDAFICYEN
FKEDLSYYFD

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 66703; Mature: 66703

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEMRYFDKYAQLVYSGKIRVCELTMKSIKRVERYKEQYIFKQEEVDKRIEFIEEECSNT
CCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KGLAGKLHLALPQKVWLETTWGFYHTVEVTKTDPDTLEEYKDFEERRLIHEVPIIVPRGT
CCCCCEEEEECCCHHHEEEECCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEECCC
GKTTLGSAIGEVGQIIDGEWGADIQLLAYSREQAGYLFNASRAMLSNEESLLHYMREADI
CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECCHHHHCCHHHHHHHHHHHHH
LRSTKQGILYETTNSLMSIKTSDYESLDGTNAHYNIFDEVHTYDDDFIKVVNDGSSRKRK
HHHHHCCEEEEECCCEEEEECCCCCCCCCCCCCEEEHHHHHCCCCCCEEEECCCCCCCCC
NWITWYISTNGTKRDKLFDKYYNIWVDILDEKIVNHSVMPWIYQLDDVSEIHNPDMWQKA
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCHHHHCCCCHHHHH
MPLLGITTEKETIAKDIEMSKNDPAQQAELMAKTFNLPVNNYLAYFSNEECKGWLDKFDK
CCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHEECCCCHHHHHHHHHCC
SLFVGNEERSARCVLGVDLSDVNDICSVSFMVVRGEERQYLNKKFMPRHTIEGLPKELRD
CEEECCCCCCCEEEEECCHHHHHHHHCEEEEEEECCHHHHHHHCCCCCHHHHCCCHHHHH
KYAEWELSGQLHVHELDYNDQAYIFEELRQFMSENRILPVAVGYDRWNAKELIRLINDYY
HHHCEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
GDICHDIPQTVKSLSNPLKVYKEKAKMGKIIFDDPVATWNHANVRVKIDANNNVFPNKEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHH
AKEKIDVFASQLDAFICYENFKEDLSYYFD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVEMRYFDKYAQLVYSGKIRVCELTMKSIKRVERYKEQYIFKQEEVDKRIEFIEEECSNT
CCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KGLAGKLHLALPQKVWLETTWGFYHTVEVTKTDPDTLEEYKDFEERRLIHEVPIIVPRGT
CCCCCEEEEECCCHHHEEEECCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEECCC
GKTTLGSAIGEVGQIIDGEWGADIQLLAYSREQAGYLFNASRAMLSNEESLLHYMREADI
CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECCHHHHCCHHHHHHHHHHHHH
LRSTKQGILYETTNSLMSIKTSDYESLDGTNAHYNIFDEVHTYDDDFIKVVNDGSSRKRK
HHHHHCCEEEEECCCEEEEECCCCCCCCCCCCCEEEHHHHHCCCCCCEEEECCCCCCCCC
NWITWYISTNGTKRDKLFDKYYNIWVDILDEKIVNHSVMPWIYQLDDVSEIHNPDMWQKA
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCHHHHCCCCHHHHH
MPLLGITTEKETIAKDIEMSKNDPAQQAELMAKTFNLPVNNYLAYFSNEECKGWLDKFDK
CCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHEECCCCHHHHHHHHHCC
SLFVGNEERSARCVLGVDLSDVNDICSVSFMVVRGEERQYLNKKFMPRHTIEGLPKELRD
CEEECCCCCCCEEEEECCHHHHHHHHCEEEEEEECCHHHHHHHCCCCCHHHHCCCHHHHH
KYAEWELSGQLHVHELDYNDQAYIFEELRQFMSENRILPVAVGYDRWNAKELIRLINDYY
HHHCEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
GDICHDIPQTVKSLSNPLKVYKEKAKMGKIIFDDPVATWNHANVRVKIDANNNVFPNKEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHH
AKEKIDVFASQLDAFICYENFKEDLSYYFD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]