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The map label for this gene is yodJ [H]

Identifier: 169833487

GI number: 169833487

Start: 670332

End: 671048

Strand: Direct

Name: yodJ [H]

Synonym: SPH_0722

Alternate gene names: 169833487

Gene position: 670332-671048 (Clockwise)

Preceding gene: 169833144

Following gene: 169834089

Centisome position: 29.85

GC content: 42.54

Gene sequence:

>717_bases
ATGAAAAAAAGATACATCGTTTTATCTGGTTTGCTGGCAGTAATCCTAGCAGCATGTTCGCAAGAAAAACCTAAAAATGA
AGAAAACACTCAAAAAACGGAACAAACTAGTCAACCTGAAGGAACTGTAGGGAGCAAATCTCAAGCCTCTAGTCAGAAGA
AGGCAGAAGTTGTCAATAAGGGAGACTACTATAGTATTCAAGGGAAGTACGATGAAATCGTCATAGCTAATAAGCACTAT
CCTTTGTCAAAAGACTATAATCCAGGAGAAAATCCAACAGCTAAAGCAGAGTTGGTCAAACTCATTGCAGCAATGCAAGC
AGCTGGCTACCCAATCAGCGATCACTACAGTGGTTTTAGAAGTTATGAAACCCAAACCAAACTTTATCAAGACTATGTGA
ATCAAGATGGTAAGGAAGCTGCTGATCGCTACTCAGCTCGCCCAGGTTATAGTGAACACCAAACAGGTCTTGCATTTGAC
CTTATTGGGACAGATGGAGATTTAGTTACTGAAGAAAAGGCGGCCCAGTGGCTCTTGGATCATGCGGCTGACTATGGCTT
TGTTGTTCGCTATCTCAAAGGCAAGGAAAAAGAGACTGGCTACATGGCGGAAGAATGGCATCTTCGCTACGTCGGAAAAG
AAGCCAAAGAAATTGCTGCAAGTGGTCTCAGTTTGGAAGAGTACTATGGCTTTGAAGGCGGCGATTACGTCGATTAA

Upstream 100 bases:

>100_bases
CCGCAGAAGATTGCCAAGTGAAATCCCATGAGTTGGAACAAATGATTAAAGCCTTATCCGATGAATTAGAGAAGCACTTG
GTCTAAGAGAGGAAGAAAAA

Downstream 100 bases:

>100_bases
AAAAGTAATTTTTCTCTTGCATTTTTAGATAAATAGTGTATAATGGAAAGGTATGTGTAAAGCATACTTGTGGGAGGTAA
AAATCTTTAATTACCGCCAA

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKKRYIVLSGLLAVILAACSQEKPKNEENTQKTEQTSQPEGTVGSKSQASSQKKAEVVNKGDYYSIQGKYDEIVIANKHY
PLSKDYNPGENPTAKAELVKLIAAMQAAGYPISDHYSGFRSYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFD
LIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAASGLSLEEYYGFEGGDYVD

Sequences:

>Translated_238_residues
MKKRYIVLSGLLAVILAACSQEKPKNEENTQKTEQTSQPEGTVGSKSQASSQKKAEVVNKGDYYSIQGKYDEIVIANKHY
PLSKDYNPGENPTAKAELVKLIAAMQAAGYPISDHYSGFRSYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFD
LIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAASGLSLEEYYGFEGGDYVD
>Mature_238_residues
MKKRYIVLSGLLAVILAACSQEKPKNEENTQKTEQTSQPEGTVGSKSQASSQKKAEVVNKGDYYSIQGKYDEIVIANKHY
PLSKDYNPGENPTAKAELVKLIAAMQAAGYPISDHYSGFRSYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFD
LIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAASGLSLEEYYGFEGGDYVD

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 26548; Mature: 26548

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRYIVLSGLLAVILAACSQEKPKNEENTQKTEQTSQPEGTVGSKSQASSQKKAEVVNK
CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
GDYYSIQGKYDEIVIANKHYPLSKDYNPGENPTAKAELVKLIAAMQAAGYPISDHYSGFR
CCEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFDLIGTDGDLVTEEKAAQWLLD
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
HAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAASGLSLEEYYGFEGGDYVD
HHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure
MKKRYIVLSGLLAVILAACSQEKPKNEENTQKTEQTSQPEGTVGSKSQASSQKKAEVVNK
CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
GDYYSIQGKYDEIVIANKHYPLSKDYNPGENPTAKAELVKLIAAMQAAGYPISDHYSGFR
CCEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFDLIGTDGDLVTEEKAAQWLLD
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
HAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAASGLSLEEYYGFEGGDYVD
HHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]