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The map label for this gene is licT [H]

Identifier: 169833306

GI number: 169833306

Start: 617557

End: 618396

Strand: Direct

Name: licT [H]

Synonym: SPH_0674

Alternate gene names: 169833306

Gene position: 617557-618396 (Clockwise)

Preceding gene: 169833658

Following gene: 169833006

Centisome position: 27.5

GC content: 29.4

Gene sequence:

>840_bases
ATGATCATAAAACGAATACTAAACCACAATGCCGTAATTGCGCAAAGTAAAAAAGATATCGATATTCTTCTTTTTGGAAG
GGGCATAGCTTTTGGAAGAAAAACTGGAGATAAAGTAAATCCAATTGATATTGAGAAAAGTTTTTTTCTCAAAAATAGAG
ATAATATGACCCGTTTTACAGAGATGTTTATTAACGTTCCTTTGGAGTTGGTGTACATCACCGAAAAAATAATTAACCTA
GGTAAAATAACATTGGGTAATAATTTTGATGAAATTATCTATATTAATTTAACGGATCATATTTCTTCGAGCATAGAACG
TTATAAAGAAGGGATTATTATTTCGAATCCCCTACGCTGGGAAATATCGAAATATTATAAAGAAGAATTTGAACTTGGGA
AAAGGGCTTTACAAATAATAAAAAAAGAGTTAGGTATTGAACTTCCAATTGACGAAGCTGCATTCATAGCGCTACATTTT
GTTAATGCTAATTTAGAAAATAATTTTCAAGAGTCGTATAAAATCACTGAAATAATTATGGGAATTGAGAAAATCATTCA
AGATTTCTATTGTACTGAGTTTAACCAAGATTCTATTGATTATTATAGATTCATAACTCATATAAAATTATTTGCCCATC
GCTTGGTTGAAAATACAACTTATTGTGACGATGATGATGAAGACTTGTTAGCATTAATGAAAAATAAATATCCTAGAGAA
TATGAATGTGGTGAACAGGTGGCAATGTTTATACAAACTGAGTACAATTATTTGCTGACTTCTAGTGAATTAGTTTATTT
GATGGCTCATATTCGTCGCTTAACAAAAAATTTAGATTAA

Upstream 100 bases:

>100_bases
GTTATCACTAATACAAGTGAGCAGGAACCTATTTAATCACATCGGAAGAAGTTTCTTGATGTTTTTAAGTAGGTTCCTTT
TATTTTAAAAGGGAAATTTT

Downstream 100 bases:

>100_bases
TAGAATAGGAGAATACCATGAGTTATAAAGATAAGGTACAAAAAATCCTCGATGTAATTGGAGGTGAAAAAAATGTCAAT
AGAGTTACCCATTGTGTAAC

Product: transcription antiterminator LicT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MIIKRILNHNAVIAQSKKDIDILLFGRGIAFGRKTGDKVNPIDIEKSFFLKNRDNMTRFTEMFINVPLELVYITEKIINL
GKITLGNNFDEIIYINLTDHISSSIERYKEGIIISNPLRWEISKYYKEEFELGKRALQIIKKELGIELPIDEAAFIALHF
VNANLENNFQESYKITEIIMGIEKIIQDFYCTEFNQDSIDYYRFITHIKLFAHRLVENTTYCDDDDEDLLALMKNKYPRE
YECGEQVAMFIQTEYNYLLTSSELVYLMAHIRRLTKNLD

Sequences:

>Translated_279_residues
MIIKRILNHNAVIAQSKKDIDILLFGRGIAFGRKTGDKVNPIDIEKSFFLKNRDNMTRFTEMFINVPLELVYITEKIINL
GKITLGNNFDEIIYINLTDHISSSIERYKEGIIISNPLRWEISKYYKEEFELGKRALQIIKKELGIELPIDEAAFIALHF
VNANLENNFQESYKITEIIMGIEKIIQDFYCTEFNQDSIDYYRFITHIKLFAHRLVENTTYCDDDDEDLLALMKNKYPRE
YECGEQVAMFIQTEYNYLLTSSELVYLMAHIRRLTKNLD
>Mature_279_residues
MIIKRILNHNAVIAQSKKDIDILLFGRGIAFGRKTGDKVNPIDIEKSFFLKNRDNMTRFTEMFINVPLELVYITEKIINL
GKITLGNNFDEIIYINLTDHISSSIERYKEGIIISNPLRWEISKYYKEEFELGKRALQIIKKELGIELPIDEAAFIALHF
VNANLENNFQESYKITEIIMGIEKIIQDFYCTEFNQDSIDYYRFITHIKLFAHRLVENTTYCDDDDEDLLALMKNKYPRE
YECGEQVAMFIQTEYNYLLTSSELVYLMAHIRRLTKNLD

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=276, Percent_Identity=33.695652173913, Blast_Score=205, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32873; Mature: 32873

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKRILNHNAVIAQSKKDIDILLFGRGIAFGRKTGDKVNPIDIEKSFFLKNRDNMTRFT
CHHHHHHCCCEEEEECCCCEEEEEEECCEEECCCCCCCCCCEECCHHHHCCCCCCHHHHH
EMFINVPLELVYITEKIINLGKITLGNNFDEIIYINLTDHISSSIERYKEGIIISNPLRW
HHHHHCCHHEEHHHHHHHHCCEEEECCCCCCEEEEEEHHHHHHHHHHHHCCEEECCCCHH
EISKYYKEEFELGKRALQIIKKELGIELPIDEAAFIALHFVNANLENNFQESYKITEIIM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEEEEECCCCCCHHHHHHHHHHHH
GIEKIIQDFYCTEFNQDSIDYYRFITHIKLFAHRLVENTTYCDDDDEDLLALMKNKYPRE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
YECGEQVAMFIQTEYNYLLTSSELVYLMAHIRRLTKNLD
CCCHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIIKRILNHNAVIAQSKKDIDILLFGRGIAFGRKTGDKVNPIDIEKSFFLKNRDNMTRFT
CHHHHHHCCCEEEEECCCCEEEEEEECCEEECCCCCCCCCCEECCHHHHCCCCCCHHHHH
EMFINVPLELVYITEKIINLGKITLGNNFDEIIYINLTDHISSSIERYKEGIIISNPLRW
HHHHHCCHHEEHHHHHHHHCCEEEECCCCCCEEEEEEHHHHHHHHHHHHCCEEECCCCHH
EISKYYKEEFELGKRALQIIKKELGIELPIDEAAFIALHFVNANLENNFQESYKITEIIM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEEEEECCCCCCHHHHHHHHHHHH
GIEKIIQDFYCTEFNQDSIDYYRFITHIKLFAHRLVENTTYCDDDDEDLLALMKNKYPRE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
YECGEQVAMFIQTEYNYLLTSSELVYLMAHIRRLTKNLD
CCCHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]