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The map label for this gene is ytzG [H]

Identifier: 169832770

GI number: 169832770

Start: 348752

End: 349474

Strand: Direct

Name: ytzG [H]

Synonym: SPH_0396

Alternate gene names: 169832770

Gene position: 348752-349474 (Clockwise)

Preceding gene: 169833618

Following gene: 169834425

Centisome position: 15.53

GC content: 44.54

Gene sequence:

>723_bases
ATGAGATTAGATAAATTTTTAGTTGCCTGTGCGGTGGGAAGTCGGACTGAGGTCAAAAACTTGCTCAAGGCTGGGCGCGT
GACTGTAAATGGTAAAAAAGAAAAATCAGCTAAATTGCAGATTGATGAAAAAATAGATGAGATTCGCTTTGATGGGCAAG
TGTTGGAGTATGAAGAGTTTGTCTACTACATGATGAACAAGCCCAAAGGAGTTATCTCAGCGACTGAGGATCCCAAGCAC
AGAACCGTTCTGGACTTGTTGGATGACTTGGCGCGGAGTAAGGAAGTTTTCCCAGTAGGACGCTTGGATATTGACACGCA
TGGTCTTTTGCTCTTGACCAATGATGGTCAGCTGGCTCATGTTCTTCTTTCGCCCAAGCGTCATGTGGACAAGACTTATC
TGGCACAAGTCAAGGGAATCATGACCCAAGAAGATGTGGAGACATTTGCTGAGGGTATTCCTCTCAAAGACTTTACCTGT
CAACCCGCTATACTGGAGCTTGTATCCATAGATACAGAAAAGAATCAAAGCCAAATCCGTGTGACCATTGCAGAAGGGAA
GTTTCATCAGATCAAGCGTATGGTGGGCTACTGTGGCAAGGAAGTGGTGGACTTGCAACGATTGACTATGGGAACTTTAG
TATTAGATGAGAACCTGGAACGAGGGGAATGGCGTCGCTTGACCAAGGAAGAATTAGAAATTCTCCTTGCTAGTATTGCT
TAA

Upstream 100 bases:

>100_bases
TTAAACGAAGTATATTTATACTATACCATAAAATTGATAATAGTTCACCTAATAAAATGTTAGTTATGTACAACAATAAT
TTCCATGATATAATAGTTCT

Downstream 100 bases:

>100_bases
TTTGATTTATATTCGAAAAAGGTGAGGGAGAATGTCCTTACCTTTTATGTTTTTTAGTTGCTTCCTTTGTGAAAAGAGTT
ATAATAGACTGTAGAATAAA

Product: RNA pseudouridine synthase family protein

Products: pseudouridine 5'-phosphate; H2O [C]

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRLDKFLVACAVGSRTEVKNLLKAGRVTVNGKKEKSAKLQIDEKIDEIRFDGQVLEYEEFVYYMMNKPKGVISATEDPKH
RTVLDLLDDLARSKEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTYLAQVKGIMTQEDVETFAEGIPLKDFTC
QPAILELVSIDTEKNQSQIRVTIAEGKFHQIKRMVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEILLASIA

Sequences:

>Translated_240_residues
MRLDKFLVACAVGSRTEVKNLLKAGRVTVNGKKEKSAKLQIDEKIDEIRFDGQVLEYEEFVYYMMNKPKGVISATEDPKH
RTVLDLLDDLARSKEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTYLAQVKGIMTQEDVETFAEGIPLKDFTC
QPAILELVSIDTEKNQSQIRVTIAEGKFHQIKRMVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEILLASIA
>Mature_240_residues
MRLDKFLVACAVGSRTEVKNLLKAGRVTVNGKKEKSAKLQIDEKIDEIRFDGQVLEYEEFVYYMMNKPKGVISATEDPKH
RTVLDLLDDLARSKEVFPVGRLDIDTHGLLLLTNDGQLAHVLLSPKRHVDKTYLAQVKGIMTQEDVETFAEGIPLKDFTC
QPAILELVSIDTEKNQSQIRVTIAEGKFHQIKRMVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEILLASIA

Specific function: Responsible For Synthesis Of Pseudouridine From Uracil-516 In 16s Ribosomal RNA. [C]

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788510, Length=236, Percent_Identity=40.2542372881356, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1787524, Length=234, Percent_Identity=32.9059829059829, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790453, Length=238, Percent_Identity=31.0924369747899, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87081838, Length=182, Percent_Identity=35.1648351648352, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: 4.2.1.70 [C]

Molecular weight: Translated: 27224; Mature: 27224

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDKFLVACAVGSRTEVKNLLKAGRVTVNGKKEKSAKLQIDEKIDEIRFDGQVLEYEEF
CCHHHEEHHHHCCCHHHHHHHHHHCCEEECCCCCCCCCEEHHHHHHHHCCCCEEEHHHHH
VYYMMNKPKGVISATEDPKHRTVLDLLDDLARSKEVFPVGRLDIDTHGLLLLTNDGQLAH
HHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCEEE
VLLSPKRHVDKTYLAQVKGIMTQEDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIR
EEECCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCEEE
VTIAEGKFHQIKRMVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEILLASIA
EEEECCHHHHHHHHHHHHCHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLDKFLVACAVGSRTEVKNLLKAGRVTVNGKKEKSAKLQIDEKIDEIRFDGQVLEYEEF
CCHHHEEHHHHCCCHHHHHHHHHHCCEEECCCCCCCCCEEHHHHHHHHCCCCEEEHHHHH
VYYMMNKPKGVISATEDPKHRTVLDLLDDLARSKEVFPVGRLDIDTHGLLLLTNDGQLAH
HHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCEEE
VLLSPKRHVDKTYLAQVKGIMTQEDVETFAEGIPLKDFTCQPAILELVSIDTEKNQSQIR
EEECCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCEEE
VTIAEGKFHQIKRMVGYCGKEVVDLQRLTMGTLVLDENLERGEWRRLTKEELEILLASIA
EEEECCHHHHHHHHHHHHCHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: uracil; D-ribose phosphate [C]

Specific reaction: uracil + D-ribose phosphate = pseudouridine 5'-phosphate + H2O [C]

General reaction: addition of H2O; elimination of H2O; C-O bond cleavage [C]

Inhibitor: 1-(Tetrahydro-2-furanyl)-5-fluorouracil; 5-fluorouracil [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]