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The map label for this gene is rbfA [H]

Identifier: 169832550

GI number: 169832550

Start: 602125

End: 602475

Strand: Direct

Name: rbfA [H]

Synonym: SPH_0654

Alternate gene names: 169832550

Gene position: 602125-602475 (Clockwise)

Preceding gene: 169834351

Following gene: 169833004

Centisome position: 26.81

GC content: 42.45

Gene sequence:

>351_bases
ATGGCAAATCATTTCCGTACAGATCGTGTGGGCATGGAAATCAAGCGTGAAGTCAATGAGATTTTGCAAAAGAAAGTCCG
TGATCCACGTGTCCAAGGTGTGACCATCACAGATGTTCAGATGCTGGGTGACTTGTCTGTTGCCAAGGTTTATTACACCA
TTTTGAGTAACCTTGCTTCGGATAACCAAAAAGTCCAAATCGGGCTTGAAAAAGCAACTGGTACCATCAAACGTGAACTT
GGTCGCAATTTGAAATTGTACAAAATCCCAGATTTGACCTTCGTCAAAGACGAGTCCATCGAGTATGGAAACAAGATTGA
CGAGATGCTACGCAATCTGGATAAGAACTAA

Upstream 100 bases:

>100_bases
TCAAATTGAACTTCGTTTCAATTTAAACTGAAAATCAAGAAGTTTAAAATAGCTAGGTCTGCTGGCCTAGCTTTTGGTTC
AAAGTAGAGAAAGGAATATC

Downstream 100 bases:

>100_bases
AGAAGAGGGGTTGCCCCTCTTTTTTGGTGGAGGAAAATAGGTTGAATTTGAAATGGAAAAATATTCTTTTATAATAGATT
GAAACTAGAATAGTACGCCT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MANHFRTDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMLGDLSVAKVYYTILSNLASDNQKVQIGLEKATGTIKREL
GRNLKLYKIPDLTFVKDESIEYGNKIDEMLRNLDKN

Sequences:

>Translated_116_residues
MANHFRTDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMLGDLSVAKVYYTILSNLASDNQKVQIGLEKATGTIKREL
GRNLKLYKIPDLTFVKDESIEYGNKIDEMLRNLDKN
>Mature_115_residues
ANHFRTDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMLGDLSVAKVYYTILSNLASDNQKVQIGLEKATGTIKRELG
RNLKLYKIPDLTFVKDESIEYGNKIDEMLRNLDKN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=119, Percent_Identity=36.1344537815126, Blast_Score=74, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13339; Mature: 13207

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANHFRTDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMLGDLSVAKVYYTILSNLAS
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCHHHHHHHHHHHHHHCC
DNQKVQIGLEKATGTIKRELGRNLKLYKIPDLTFVKDESIEYGNKIDEMLRNLDKN
CCCEEEEEHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
ANHFRTDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMLGDLSVAKVYYTILSNLAS
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCHHHHHHHHHHHHHHCC
DNQKVQIGLEKATGTIKRELGRNLKLYKIPDLTFVKDESIEYGNKIDEMLRNLDKN
CCCEEEEEHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA