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The map label for this gene is soxS [C]

Identifier: 169825101

GI number: 169825101

Start: 1549742

End: 1550734

Strand: Direct

Name: soxS [C]

Synonym: FMG_1404

Alternate gene names: 169825101

Gene position: 1549742-1550734 (Clockwise)

Preceding gene: 169825087

Following gene: 169825102

Centisome position: 86.21

GC content: 30.61

Gene sequence:

>993_bases
ATGACTTATTATGATTTTGTAAAAGATTATATGAAAGTGGATGAATGCAAAAACAATAAGAAGTATTCAAGTGCAGGACA
CACTTTTTGTTGGAATAAAGAAGATTTAACTTATGCAGAAGGCCTGTATTGGTTTTATGAAGGAGATGGATTTATTATTG
ATGTCCATGACTTTTATATAAGTGAAGAAGTAGTTCAAAATAATACTTATAGCATGGCAGATTATGTTTCAATATACACA
AGCTACATAGTCAGCGCAAACGGGGAGAAATTCAGTCCGTATCAAACGCTTACCGCAAACTCTTTATGTACTCTTGATTT
TGATAATATAAAAGATGACTTCCGATTTTTATTACATGAAAACTGCTATTATCTTGCTGTTTCCATAGGTTTTAAAAAAG
AGCTAATAGAAAAACATTTAGCATCTATTAACATTAATCCGGAATCATTTTATTCATCTTTACTTCAACCGAATCAAATT
ATACTTACAAAATCCCTAGAAAAAGTGGCAATGGAAATATTAAATTGTAAGATGGACGCCCCTGCCGCTGATTTTTTCTT
TAAAGCCAAAGCAAATGAATGGGTAAGTATTGTGATTGACACATACTTAAATAGAAAAAAATATAAAATTGAGTCTGATG
ATAATAAAGCACTTGAAGATGTAGCAAGATTCTTAGATGATCATTTCGCAATGAATGTAAATCAAGAAACCCTTGAAAAA
ATATCTAAAATGAGCGGAACAAAATTAAAAAATTTGTTCAGAGAAAAATATGGTCAAAGCATTACAGAATACACTCAAAG
AAAAAGAATGAATGTAGCTGAAACTCTTCTCTTAAATACCGAACTGCCTATAAAAGAAATTGCAGAATCTGTTGGGTATT
CATCTGCTAGCAAATTTTCCATCTATTACAAAAGATACAAGGGAAAACTTCCAAGTGAAGTCCGTAATTTAGCTTGCAAA
CATCTCAATTTAAAATGCGATTATTGTGATTAA

Upstream 100 bases:

>100_bases
TATCATTGTATTTTTATTATACATCGGTTATAATTACTAATACAATAGTTTTAAATTAATAAGGCTAATTGGAATATTGT
CTCAAAGGGATAGGTGGATT

Downstream 100 bases:

>100_bases
AGTAATGGAGTGTTATTATTGTTTGAACCAATTGTGCTGTAATAGTTGCAAGTGCTGCACCTTCAATTGCATATTTCTCC
ATTAATTTCATTAGAATAAG

Product: transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Chemotaxis Protein CheY

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MTYYDFVKDYMKVDECKNNKKYSSAGHTFCWNKEDLTYAEGLYWFYEGDGFIIDVHDFYISEEVVQNNTYSMADYVSIYT
SYIVSANGEKFSPYQTLTANSLCTLDFDNIKDDFRFLLHENCYYLAVSIGFKKELIEKHLASININPESFYSSLLQPNQI
ILTKSLEKVAMEILNCKMDAPAADFFFKAKANEWVSIVIDTYLNRKKYKIESDDNKALEDVARFLDDHFAMNVNQETLEK
ISKMSGTKLKNLFREKYGQSITEYTQRKRMNVAETLLLNTELPIKEIAESVGYSSASKFSIYYKRYKGKLPSEVRNLACK
HLNLKCDYCD

Sequences:

>Translated_330_residues
MTYYDFVKDYMKVDECKNNKKYSSAGHTFCWNKEDLTYAEGLYWFYEGDGFIIDVHDFYISEEVVQNNTYSMADYVSIYT
SYIVSANGEKFSPYQTLTANSLCTLDFDNIKDDFRFLLHENCYYLAVSIGFKKELIEKHLASININPESFYSSLLQPNQI
ILTKSLEKVAMEILNCKMDAPAADFFFKAKANEWVSIVIDTYLNRKKYKIESDDNKALEDVARFLDDHFAMNVNQETLEK
ISKMSGTKLKNLFREKYGQSITEYTQRKRMNVAETLLLNTELPIKEIAESVGYSSASKFSIYYKRYKGKLPSEVRNLACK
HLNLKCDYCD
>Mature_329_residues
TYYDFVKDYMKVDECKNNKKYSSAGHTFCWNKEDLTYAEGLYWFYEGDGFIIDVHDFYISEEVVQNNTYSMADYVSIYTS
YIVSANGEKFSPYQTLTANSLCTLDFDNIKDDFRFLLHENCYYLAVSIGFKKELIEKHLASININPESFYSSLLQPNQII
LTKSLEKVAMEILNCKMDAPAADFFFKAKANEWVSIVIDTYLNRKKYKIESDDNKALEDVARFLDDHFAMNVNQETLEKI
SKMSGTKLKNLFREKYGQSITEYTQRKRMNVAETLLLNTELPIKEIAESVGYSSASKFSIYYKRYKGKLPSEVRNLACKH
LNLKCDYCD

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38464; Mature: 38333

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYYDFVKDYMKVDECKNNKKYSSAGHTFCWNKEDLTYAEGLYWFYEGDGFIIDVHDFYI
CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCEEEEEEHHHHH
SEEVVQNNTYSMADYVSIYTSYIVSANGEKFSPYQTLTANSLCTLDFDNIKDDFRFLLHE
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEECCCHHHHHHHHHHC
NCYYLAVSIGFKKELIEKHLASININPESFYSSLLQPNQIILTKSLEKVAMEILNCKMDA
CEEEEEEECCHHHHHHHHHHHEECCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCC
PAADFFFKAKANEWVSIVIDTYLNRKKYKIESDDNKALEDVARFLDDHFAMNVNQETLEK
CCHHHEEEECCCCHHEEHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
ISKMSGTKLKNLFREKYGQSITEYTQRKRMNVAETLLLNTELPIKEIAESVGYSSASKFS
HHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
IYYKRYKGKLPSEVRNLACKHLNLKCDYCD
HHHHHHCCCCHHHHHHHHHHHCCCEECCCC
>Mature Secondary Structure 
TYYDFVKDYMKVDECKNNKKYSSAGHTFCWNKEDLTYAEGLYWFYEGDGFIIDVHDFYI
CHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCEEEEEEHHHHH
SEEVVQNNTYSMADYVSIYTSYIVSANGEKFSPYQTLTANSLCTLDFDNIKDDFRFLLHE
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEECCCHHHHHHHHHHC
NCYYLAVSIGFKKELIEKHLASININPESFYSSLLQPNQIILTKSLEKVAMEILNCKMDA
CEEEEEEECCHHHHHHHHHHHEECCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCC
PAADFFFKAKANEWVSIVIDTYLNRKKYKIESDDNKALEDVARFLDDHFAMNVNQETLEK
CCHHHEEEECCCCHHEEHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
ISKMSGTKLKNLFREKYGQSITEYTQRKRMNVAETLLLNTELPIKEIAESVGYSSASKFS
HHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
IYYKRYKGKLPSEVRNLACKHLNLKCDYCD
HHHHHHCCCCHHHHHHHHHHHCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA