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The map label for this gene is ydeC [H]

Identifier: 169824764

GI number: 169824764

Start: 1155233

End: 1156078

Strand: Direct

Name: ydeC [H]

Synonym: FMG_1067

Alternate gene names: 169824764

Gene position: 1155233-1156078 (Clockwise)

Preceding gene: 169824763

Following gene: 169824794

Centisome position: 64.27

GC content: 29.08

Gene sequence:

>846_bases
ATGAATAGTGAGTTTTACAAGATTGAACCTAGAGATGATTTGTACATCAAGTTATTGTTTATTTCAAAAACAGAACTGAA
AATCAACGAAGAAATAAAACGAGGAATTCTTCCTTTTCACCAAATGTACTATTGTCTAAAAGGAAATGGAACTTTTATTG
TAAACGACAAAAAAATAGAAATACTACCTTTTGATGTATTAATCGTCAATCAAGGATCCAAAATAACAGAAATTTCAAAA
TCAGAAAGTTTTGAGTTTTATACATTAGCTATTTCGGAAGTTTCATTTGATACAGAACAAAAAGATAAAGCCGTACTAAG
CATCAAACACAACCACATTAATGACCGAGATATGGTTATTTTGTACTATATTAACAAAATTCTTGAAGAAGCCAAGTACA
AGAGATTTAGATATCAAAGGGTATGCTCTTGTTTGATAAGTATTTTGATTACAGAAATTCAAAGACGAGGAGATCTAAAG
TTTACAATGGATGATCCCGCACAAGATTCATTTACTAAACATGTCCATGATTACATCTATGAAAATTTCAACCAAGAAAT
AACACTTGACTCCATATCAGAAAAATTCATGATCTCCAAATCACATTTAATTCATGAATTTAAAAATAATTACGGAAAAA
CTCCAATGCAGTTTTTGCTCAACAGAAGAATGGAATCAGCAATGTTGTTATTAAAAACATCAAATAAGCCTATTAACGAT
ATAGCAAAACTCTGCGGATTCAATTCACAATCTTATTTTGATCAAGCGTTTCGTAGAGTTGTAAAAGTCACTCCTAACGA
TTATAGAAACAAATACAAAACAAAAATCAAAAAAATAAAAAAATAG

Upstream 100 bases:

>100_bases
ACGGAAAATACAATCGAAAGTTCCGATTTAAAAGGATTCAAAATCAATTCTACAAATATTTTGATTAATGGAATATGTAA
GGACTGTTTGGATAAAGAAA

Downstream 100 bases:

>100_bases
ACTTTGTTTAACATATCAATGTTTCAAACAAAGTCTTTTTTTACTTATTCAGACACTAATGATTTCACAAACACCAGCTT
TTTCTTATCGCTGTTTTTTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MNSEFYKIEPRDDLYIKLLFISKTELKINEEIKRGILPFHQMYYCLKGNGTFIVNDKKIEILPFDVLIVNQGSKITEISK
SESFEFYTLAISEVSFDTEQKDKAVLSIKHNHINDRDMVILYYINKILEEAKYKRFRYQRVCSCLISILITEIQRRGDLK
FTMDDPAQDSFTKHVHDYIYENFNQEITLDSISEKFMISKSHLIHEFKNNYGKTPMQFLLNRRMESAMLLLKTSNKPIND
IAKLCGFNSQSYFDQAFRRVVKVTPNDYRNKYKTKIKKIKK

Sequences:

>Translated_281_residues
MNSEFYKIEPRDDLYIKLLFISKTELKINEEIKRGILPFHQMYYCLKGNGTFIVNDKKIEILPFDVLIVNQGSKITEISK
SESFEFYTLAISEVSFDTEQKDKAVLSIKHNHINDRDMVILYYINKILEEAKYKRFRYQRVCSCLISILITEIQRRGDLK
FTMDDPAQDSFTKHVHDYIYENFNQEITLDSISEKFMISKSHLIHEFKNNYGKTPMQFLLNRRMESAMLLLKTSNKPIND
IAKLCGFNSQSYFDQAFRRVVKVTPNDYRNKYKTKIKKIKK
>Mature_281_residues
MNSEFYKIEPRDDLYIKLLFISKTELKINEEIKRGILPFHQMYYCLKGNGTFIVNDKKIEILPFDVLIVNQGSKITEISK
SESFEFYTLAISEVSFDTEQKDKAVLSIKHNHINDRDMVILYYINKILEEAKYKRFRYQRVCSCLISILITEIQRRGDLK
FTMDDPAQDSFTKHVHDYIYENFNQEITLDSISEKFMISKSHLIHEFKNNYGKTPMQFLLNRRMESAMLLLKTSNKPIND
IAKLCGFNSQSYFDQAFRRVVKVTPNDYRNKYKTKIKKIKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=231, Percent_Identity=23.3766233766234, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787987, Length=106, Percent_Identity=31.1320754716981, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33376; Mature: 33376

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSEFYKIEPRDDLYIKLLFISKTELKINEEIKRGILPFHQMYYCLKGNGTFIVNDKKIE
CCCCEEEECCCCCEEEEEEEEECCCEEEHHHHHHCCCCHHHEEEEEECCCEEEEECCEEE
ILPFDVLIVNQGSKITEISKSESFEFYTLAISEVSFDTEQKDKAVLSIKHNHINDRDMVI
EEEEEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEH
LYYINKILEEAKYKRFRYQRVCSCLISILITEIQRRGDLKFTMDDPAQDSFTKHVHDYIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
ENFNQEITLDSISEKFMISKSHLIHEFKNNYGKTPMQFLLNRRMESAMLLLKTSNKPIND
HCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEECCCCCHHH
IAKLCGFNSQSYFDQAFRRVVKVTPNDYRNKYKTKIKKIKK
HHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNSEFYKIEPRDDLYIKLLFISKTELKINEEIKRGILPFHQMYYCLKGNGTFIVNDKKIE
CCCCEEEECCCCCEEEEEEEEECCCEEEHHHHHHCCCCHHHEEEEEECCCEEEEECCEEE
ILPFDVLIVNQGSKITEISKSESFEFYTLAISEVSFDTEQKDKAVLSIKHNHINDRDMVI
EEEEEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEH
LYYINKILEEAKYKRFRYQRVCSCLISILITEIQRRGDLKFTMDDPAQDSFTKHVHDYIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
ENFNQEITLDSISEKFMISKSHLIHEFKNNYGKTPMQFLLNRRMESAMLLLKTSNKPIND
HCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEECCCCCHHH
IAKLCGFNSQSYFDQAFRRVVKVTPNDYRNKYKTKIKKIKK
HHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]