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The map label for this gene is ybeY [C]

Identifier: 169824430

GI number: 169824430

Start: 797152

End: 797613

Strand: Direct

Name: ybeY [C]

Synonym: FMG_0733

Alternate gene names: 169824430

Gene position: 797152-797613 (Clockwise)

Preceding gene: 169824429

Following gene: 169824431

Centisome position: 44.35

GC content: 25.97

Gene sequence:

>462_bases
ATGATAATACAGATAAGTAATAGACAAGAAGATTTTCAAATTGATGATGAATTGACATCAGATATTGAAAAATCAATAAG
AATATGCTTGCTTCAAGAATTAAATGACGATAATTATGAAATATCTTTATCTTTTGTTAGTGAATCAGAAATTAGGAAAT
TAAATAGTGATTATCGAGATAAAGACAGTGTAACAGATGTGTTAAGTTTTCCTTTAGATGATGATTTTGCAATTCAAACA
AATCTTTTGGGAGATATAATTATATGCTGCAAAAGAGCTATTGAACAAGCAAAAGAATACAATCATTCTATTAAAAGAGA
AATTGTGTACTTAGTAGTTCATTCAATGTTTCATTTGTTAGGTTATGATCATATTGATGAAAGCGATAGAATTATTATGC
GAAACAAGGAAAAATCAGCATTGAAAGAAATAGGTATTTATAAAGATGAAGAATTTAAATAG

Upstream 100 bases:

>100_bases
ATAAGCTTTTTAGAGTTTGAAAAAACAGATGTTGTACGTCATCCGCTAGTACAAAAAATTATTGGAGCTTATGAAAATTT
AGAAAATAATAGGTCGAATT

Downstream 100 bases:

>100_bases
CAAATCAAAAGATAAAAACATTTCAAAAAATACATCTTTTATTACTAGCTTTCAATACGCAATGGATGGAATTATACATT
GCTTGAAAAATGAAAGAAAC

Product: putative metal-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MIIQISNRQEDFQIDDELTSDIEKSIRICLLQELNDDNYEISLSFVSESEIRKLNSDYRDKDSVTDVLSFPLDDDFAIQT
NLLGDIIICCKRAIEQAKEYNHSIKREIVYLVVHSMFHLLGYDHIDESDRIIMRNKEKSALKEIGIYKDEEFK

Sequences:

>Translated_153_residues
MIIQISNRQEDFQIDDELTSDIEKSIRICLLQELNDDNYEISLSFVSESEIRKLNSDYRDKDSVTDVLSFPLDDDFAIQT
NLLGDIIICCKRAIEQAKEYNHSIKREIVYLVVHSMFHLLGYDHIDESDRIIMRNKEKSALKEIGIYKDEEFK
>Mature_153_residues
MIIQISNRQEDFQIDDELTSDIEKSIRICLLQELNDDNYEISLSFVSESEIRKLNSDYRDKDSVTDVLSFPLDDDFAIQT
NLLGDIIICCKRAIEQAKEYNHSIKREIVYLVVHSMFHLLGYDHIDESDRIIMRNKEKSALKEIGIYKDEEFK

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=86, Percent_Identity=39.5348837209302, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_FINM2 (B0S1B1)

Other databases:

- EMBL:   AP008971
- RefSeq:   YP_001692041.1
- ProteinModelPortal:   B0S1B1
- SMR:   B0S1B1
- GeneID:   6020040
- GenomeReviews:   AP008971_GR
- KEGG:   fma:FMG_0733
- HOGENOM:   HBG734136
- OMA:   GCDYATD
- BioCyc:   FMAG334413:FMG_0733-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17998; Mature: 17998

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIQISNRQEDFQIDDELTSDIEKSIRICLLQELNDDNYEISLSFVSESEIRKLNSDYRD
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHCCCCCC
KDSVTDVLSFPLDDDFAIQTNLLGDIIICCKRAIEQAKEYNHSIKREIVYLVVHSMFHLL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYDHIDESDRIIMRNKEKSALKEIGIYKDEEFK
CCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIIQISNRQEDFQIDDELTSDIEKSIRICLLQELNDDNYEISLSFVSESEIRKLNSDYRD
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHCCCCCC
KDSVTDVLSFPLDDDFAIQTNLLGDIIICCKRAIEQAKEYNHSIKREIVYLVVHSMFHLL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYDHIDESDRIIMRNKEKSALKEIGIYKDEEFK
CCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA