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The map label for this gene is lytB [H]

Identifier: 169824340

GI number: 169824340

Start: 706740

End: 707414

Strand: Direct

Name: lytB [H]

Synonym: FMG_0643

Alternate gene names: 169824340

Gene position: 706740-707414 (Clockwise)

Preceding gene: 169824338

Following gene: 169824341

Centisome position: 39.32

GC content: 27.56

Gene sequence:

>675_bases
ATGAAAAACAAGAAATTAATAAAAAAAAGAGTTGGAATATTCTTGCTAATGATAGTTTTTTGCTCCTGTTTAATAATAAA
CTATTCTGAAAATTACTTTTCTTTTTCTCGAAAAATCACTCATCATAAAAGTGAATTAGAAGATAATGAGTTGAAAACAT
TAAATAAATTAGAAAAGGACTTGGTTGAATTCAAGAAAGTTGGGGCTTTGAAGATTACAGAAGATAATATTTTTTATCCA
ACTCATAAATCTAAAATATCTGAAAGAATGTTAGAGGTTGCATTAGAAGGTACTGATTTAGAGGGTAATGCACATTCCTT
CATTAAAGTTGAAAAGAAATATGGAGTGAACGCTTTGTATTTACTAGCTATAGCAAATCATGAATCTGATTTTGGACAGA
GCAGAATAGCAAAGGATAAAAATAATTTGTTTGGATTCAATGCTATAGATTCAAATCCATATAATGGAGCAAGTCAATAC
GATTCACTTGATGAGGGAATTCAAGATATTGGTAAAAAAATTAAAATATTGTATCTTAGTGATAATGGGAAGTATTTTAA
AGGATATAATTCTTATGCTATGAATAAAAACTATGCAAGTGATAAGAATTGGGGAGAAAAAGTAAACAATCACATGATAC
TAATAGCACAAAAGATCTTATCGAGCTATAAATAA

Upstream 100 bases:

>100_bases
AGCTTAAGAGTACAATATTTCAAGATTATTACAATAATGAAAATCAATGGGAAATAATAAAAAATTATGATAAAATACTA
TTCATATCCTAGGAGGAATA

Downstream 100 bases:

>100_bases
TTAAAATAGAGAGCAAGCATGAAGAAATTTTTACTGGGAATATTAATATTAATATCATTAACTGGCTGTGACAAATTTGG
TCAAGTTGAAGCTGAAAATA

Product: endo-beta-N-acetylglucosaminidase

Products: NA

Alternate protein names: Murein hydrolase [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKNKKLIKKRVGIFLLMIVFCSCLIINYSENYFSFSRKITHHKSELEDNELKTLNKLEKDLVEFKKVGALKITEDNIFYP
THKSKISERMLEVALEGTDLEGNAHSFIKVEKKYGVNALYLLAIANHESDFGQSRIAKDKNNLFGFNAIDSNPYNGASQY
DSLDEGIQDIGKKIKILYLSDNGKYFKGYNSYAMNKNYASDKNWGEKVNNHMILIAQKILSSYK

Sequences:

>Translated_224_residues
MKNKKLIKKRVGIFLLMIVFCSCLIINYSENYFSFSRKITHHKSELEDNELKTLNKLEKDLVEFKKVGALKITEDNIFYP
THKSKISERMLEVALEGTDLEGNAHSFIKVEKKYGVNALYLLAIANHESDFGQSRIAKDKNNLFGFNAIDSNPYNGASQY
DSLDEGIQDIGKKIKILYLSDNGKYFKGYNSYAMNKNYASDKNWGEKVNNHMILIAQKILSSYK
>Mature_224_residues
MKNKKLIKKRVGIFLLMIVFCSCLIINYSENYFSFSRKITHHKSELEDNELKTLNKLEKDLVEFKKVGALKITEDNIFYP
THKSKISERMLEVALEGTDLEGNAHSFIKVEKKYGVNALYLLAIANHESDFGQSRIAKDKNNLFGFNAIDSNPYNGASQY
DSLDEGIQDIGKKIKILYLSDNGKYFKGYNSYAMNKNYASDKNWGEKVNNHMILIAQKILSSYK

Specific function: Plays an important role in cell wall degradation and cell separation [H]

COG id: COG4193

COG function: function code G; Beta- N-acetylglucosaminidase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 13 cell wall-binding repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018337
- InterPro:   IPR013338
- InterPro:   IPR002901 [H]

Pfam domain/function: PF01473 CW_binding_1; PF01832 Glucosaminidase [H]

EC number: =3.2.1.96 [H]

Molecular weight: Translated: 25734; Mature: 25734

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKKLIKKRVGIFLLMIVFCSCLIINYSENYFSFSRKITHHKSELEDNELKTLNKLEKD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LVEFKKVGALKITEDNIFYPTHKSKISERMLEVALEGTDLEGNAHSFIKVEKKYGVNALY
HHHHHHCCCEEEECCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHCCCCEEE
LLAIANHESDFGQSRIAKDKNNLFGFNAIDSNPYNGASQYDSLDEGIQDIGKKIKILYLS
EEEEECCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEC
DNGKYFKGYNSYAMNKNYASDKNWGEKVNNHMILIAQKILSSYK
CCCCEEECCCCCCCCCCCCCCCCHHHHHCCCEEEEEHHHHHHCC
>Mature Secondary Structure
MKNKKLIKKRVGIFLLMIVFCSCLIINYSENYFSFSRKITHHKSELEDNELKTLNKLEKD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LVEFKKVGALKITEDNIFYPTHKSKISERMLEVALEGTDLEGNAHSFIKVEKKYGVNALY
HHHHHHCCCEEEECCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHCCCCEEE
LLAIANHESDFGQSRIAKDKNNLFGFNAIDSNPYNGASQYDSLDEGIQDIGKKIKILYLS
EEEEECCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEC
DNGKYFKGYNSYAMNKNYASDKNWGEKVNNHMILIAQKILSSYK
CCCCEEECCCCCCCCCCCCCCCCHHHHHCCCEEEEEHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11463916 [H]