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The map label for this gene is yqgF [C]

Identifier: 169824325

GI number: 169824325

Start: 695117

End: 695530

Strand: Direct

Name: yqgF [C]

Synonym: FMG_0628

Alternate gene names: 169824325

Gene position: 695117-695530 (Clockwise)

Preceding gene: 169824324

Following gene: 169824326

Centisome position: 38.67

GC content: 30.43

Gene sequence:

>414_bases
ATGGAAAGATATATTGGACTTGATGTGGGAGATAGGACTATAGGTGTCGCTATAAGTGATCCGTTTTTATTGACTGCCCA
ATCATTAATGACGATCAAGAGAAAAAGTAAAATTGAAGATATAGAAATCATTAATGATATAATTAAAGAGAAAGAGGTCA
GTAAAATTATAGTAGGTCTACCTAAAAACATGAATAATACAATTGGCCCTCAAGCTAAAAAAGTTAAAACATTTGTAAAA
GAACTAAGAAAACATACGGATTTGGATATTGAATATGTTGATGAGAGATTGACAACTGTCAGTGCTACGAGAGTTTTGAT
AGAACAAAATGTATCAAGAAAAAAAAGAAAAGATGTAATAGATAGTGTTGCAGCGACATATATTCTGCAAACTTATTTAG
ATATGGGAAGATAA

Upstream 100 bases:

>100_bases
TTATTGGGAGAAATGTTAGAAGTTTACTTGAATGAAATAGATAAATAAAGGATAATGTAGAGCTGTTACTTTTAACAGCT
CTCAAAATATGTAAAAATTT

Downstream 100 bases:

>100_bases
TTATGGAAACAATAAAATTATACGATGAAAATAATAATGAAAAAGAATTTAAAATAATTAATACATTTGGTATGGATGAT
GATAATTATTGCGTATTAGA

Product: putative endonuclease involved in recombination

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGLPKNMNNTIGPQAKKVKTFVK
ELRKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVIDSVAATYILQTYLDMGR

Sequences:

>Translated_137_residues
MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGLPKNMNNTIGPQAKKVKTFVK
ELRKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVIDSVAATYILQTYLDMGR
>Mature_137_residues
MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGLPKNMNNTIGPQAKKVKTFVK
ELRKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVIDSVAATYILQTYLDMGR

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=132, Percent_Identity=34.8484848484849, Blast_Score=87, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15606; Mature: 15606

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGL
CCCEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
PKNMNNTIGPQAKKVKTFVKELRKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSVAATYILQTYLDMGR
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MERYIGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGL
CCCEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
PKNMNNTIGPQAKKVKTFVKELRKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSVAATYILQTYLDMGR
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA