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The map label for this gene is cdaR [H]

Identifier: 169823941

GI number: 169823941

Start: 287207

End: 288289

Strand: Direct

Name: cdaR [H]

Synonym: FMG_0244

Alternate gene names: 169823941

Gene position: 287207-288289 (Clockwise)

Preceding gene: 169823938

Following gene: 169823944

Centisome position: 15.98

GC content: 32.23

Gene sequence:

>1083_bases
ATGAGGATTTCTGATCACACAGCAAAAATGATAGTCGAAAAATTAAAAGATGTAATTGATTACGATTTGAACTTTTTCGA
CCAGGAAGGATATATTATTTATTCCACAAATTCAAAAAGAATCGGCACTTATCATGAAGCTGCCAAGGAGTGCGTTGTAC
AAAACAAAACTATTTTTGTGGATAATGAGAGAGAATACGTCGGAGCAAAGAAGGGGATTAACATTCCTGTTACAATTGAC
GGAGAAATTATCGCCGTAATTGGAATTACTGGAAATAAAGACGAGGTTATGAAATACGGCAACATCATTAAGAAAATGAC
CGAAATACTCGTCAAAGAACAACTTGTTGAGAAAAACAGACTCAAGAAAAAAGATATGAACAAGTATTTATTTGAGAGCT
TGATAAATGAGTTGGACGATTACGGATTGTACAGATATTTGGAAACAGAAGATGAAAAATTCGTAATCGTCGGAAGAAAT
TCTGACAACAGATTTTTATTGAAAGATTCCGATCAAATTTACAAAATTTTGGAGAATAACTTGTCCAATAATTTCGTATA
TAGCGTATTTTACGGAGAAATTGTAATCCTAGCAAACAACGTAGACAAGATTATCATCAAGAAAAAACTGGAAAAAATTA
GAAACCAAATTCACGACGTTATAGACAGTAGAGTGTATTTTGGTATTAGTGGTTCATTCAAAATAATCAACGAATTTAAG
AAAAATTACGATAACTGTCTGGTTGCATTGGATTGGTTGGATAATTTGCAAAGAAAAGACTGTGTTGTGGATTATTCTAC
GTTGGATATGGGGATTTTACTTGGAAGTATCAAAAAGGACAGAATAAAAAAATTCAAAGAAGTCGTGTTGAAAGATATTT
CCGACGAAGATTACAATATTTACAAAGATTTGATAAAAATTTATGCGACAAATAATCAAAGCATAACAAAATGCGCAGAG
GATTTGTTTGTGCACAAAAACACTGTTCAGTACAGATTGAATAAACTCAGAGACATAACAGGCCTCGACCCTAGAAATGT
AGAAGATTTTATTAGGCTGTATTTGGCGTTTATTTTAAACTAA

Upstream 100 bases:

>100_bases
AACCTCCTAACTAAATTTTATAACAAACGATTGCACAAATGTATGTTTTATGTAATAATAATATCTAATGAGCAAATAAA
TTAATTATTATGGAGAACAA

Downstream 100 bases:

>100_bases
AAAAAATTATTATTGGCAAATTTCACAGAATATGGAATTGCAAGAGGTAGTTTCAAGATACAGGAAAGTAGAAAACCAGC
TTGCACGAATATCTAGACTA

Product: hypothetical protein

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MRISDHTAKMIVEKLKDVIDYDLNFFDQEGYIIYSTNSKRIGTYHEAAKECVVQNKTIFVDNEREYVGAKKGINIPVTID
GEIIAVIGITGNKDEVMKYGNIIKKMTEILVKEQLVEKNRLKKKDMNKYLFESLINELDDYGLYRYLETEDEKFVIVGRN
SDNRFLLKDSDQIYKILENNLSNNFVYSVFYGEIVILANNVDKIIIKKKLEKIRNQIHDVIDSRVYFGISGSFKIINEFK
KNYDNCLVALDWLDNLQRKDCVVDYSTLDMGILLGSIKKDRIKKFKEVVLKDISDEDYNIYKDLIKIYATNNQSITKCAE
DLFVHKNTVQYRLNKLRDITGLDPRNVEDFIRLYLAFILN

Sequences:

>Translated_360_residues
MRISDHTAKMIVEKLKDVIDYDLNFFDQEGYIIYSTNSKRIGTYHEAAKECVVQNKTIFVDNEREYVGAKKGINIPVTID
GEIIAVIGITGNKDEVMKYGNIIKKMTEILVKEQLVEKNRLKKKDMNKYLFESLINELDDYGLYRYLETEDEKFVIVGRN
SDNRFLLKDSDQIYKILENNLSNNFVYSVFYGEIVILANNVDKIIIKKKLEKIRNQIHDVIDSRVYFGISGSFKIINEFK
KNYDNCLVALDWLDNLQRKDCVVDYSTLDMGILLGSIKKDRIKKFKEVVLKDISDEDYNIYKDLIKIYATNNQSITKCAE
DLFVHKNTVQYRLNKLRDITGLDPRNVEDFIRLYLAFILN
>Mature_360_residues
MRISDHTAKMIVEKLKDVIDYDLNFFDQEGYIIYSTNSKRIGTYHEAAKECVVQNKTIFVDNEREYVGAKKGINIPVTID
GEIIAVIGITGNKDEVMKYGNIIKKMTEILVKEQLVEKNRLKKKDMNKYLFESLINELDDYGLYRYLETEDEKFVIVGRN
SDNRFLLKDSDQIYKILENNLSNNFVYSVFYGEIVILANNVDKIIIKKKLEKIRNQIHDVIDSRVYFGISGSFKIINEFK
KNYDNCLVALDWLDNLQRKDCVVDYSTLDMGILLGSIKKDRIKKFKEVVLKDISDEDYNIYKDLIKIYATNNQSITKCAE
DLFVHKNTVQYRLNKLRDITGLDPRNVEDFIRLYLAFILN

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=376, Percent_Identity=25.2659574468085, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 42132; Mature: 42132

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS00962 RIBOSOMAL_S2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRISDHTAKMIVEKLKDVIDYDLNFFDQEGYIIYSTNSKRIGTYHEAAKECVVQNKTIFV
CCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEE
DNEREYVGAKKGINIPVTIDGEIIAVIGITGNKDEVMKYGNIIKKMTEILVKEQLVEKNR
ECCHHHCCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKKKDMNKYLFESLINELDDYGLYRYLETEDEKFVIVGRNSDNRFLLKDSDQIYKILENN
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCEEEECCCHHHHHHHHCC
LSNNFVYSVFYGEIVILANNVDKIIIKKKLEKIRNQIHDVIDSRVYFGISGSFKIINEFK
CCCCEEEEEEECEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHH
KNYDNCLVALDWLDNLQRKDCVVDYSTLDMGILLGSIKKDRIKKFKEVVLKDISDEDYNI
HCCCCEEEEEHHHHCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHH
YKDLIKIYATNNQSITKCAEDLFVHKNTVQYRLNKLRDITGLDPRNVEDFIRLYLAFILN
HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MRISDHTAKMIVEKLKDVIDYDLNFFDQEGYIIYSTNSKRIGTYHEAAKECVVQNKTIFV
CCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEE
DNEREYVGAKKGINIPVTIDGEIIAVIGITGNKDEVMKYGNIIKKMTEILVKEQLVEKNR
ECCHHHCCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKKKDMNKYLFESLINELDDYGLYRYLETEDEKFVIVGRNSDNRFLLKDSDQIYKILENN
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCEEEECCCHHHHHHHHCC
LSNNFVYSVFYGEIVILANNVDKIIIKKKLEKIRNQIHDVIDSRVYFGISGSFKIINEFK
CCCCEEEEEEECEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHH
KNYDNCLVALDWLDNLQRKDCVVDYSTLDMGILLGSIKKDRIKKFKEVVLKDISDEDYNI
HCCCCEEEEEHHHHCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHH
YKDLIKIYATNNQSITKCAEDLFVHKNTVQYRLNKLRDITGLDPRNVEDFIRLYLAFILN
HHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]