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The map label for this gene is radC [C]

Identifier: 169823524

GI number: 169823524

Start: 11034

End: 11534

Strand: Reverse

Name: radC [C]

Synonym: FMG_P0010

Alternate gene names: 169823524

Gene position: 11534-11034 (Counterclockwise)

Preceding gene: 169823525

Following gene: 169823523

Centisome position: 6.1

GC content: 27.94

Gene sequence:

>501_bases
ATGAAATTAAAAGAATTAGAACTTGTAGTTAGAGATACTGTTATAAAATACGATGGAAGAGAAAAAGTTATAGATAATTT
TTTAATTGAATCAACTAAAAAACAACATAACAAACCAGAAGCATTTGAGAAATTATTGTTCAATTATTTTTCATTATTTA
AAGATGAAAAAGAAAGGTTAATATCTATTTTATTAGATACAAAAAATAAAATTATTGGTATTGATTTGGTATCTATTGGC
ACGTTAAATTCTTCTTTAGTGCACCCAAGAGAGTTATTTAGAAAAGCAATATTGGCAGGTGCTAACTCTATAATTATAGC
TCATAATCATCCGTCTAACAGTACCGAGCCATCAAGTGCCGATATTGCTATGGCTAAAAGATTAGAAAAATGTGGCGACA
TATTAGGCATACCATTATTAGATAGTTTGATTATAGCTTTTGATAGTACTCCAGAAAAGAAAGGTCGTTTATTAAGCATG
AGACAAAATCAGGATTTTTAA

Upstream 100 bases:

>100_bases
TACCTCCTATATGGTGGTACAGGTTAAAGATAGGATAACTAATCAAGGTGTGTAATATTTTCGATATATTACACACATAA
CAAGAATAAAGGAGAGAAAA

Downstream 100 bases:

>100_bases
AGATTTTTTATAAAAATTTGGGTAGGGTTAGATTATTATTTTATATTCTTGCTCTATCCATCGCCTCTTATATATGGTAC
ATGGTGAAGATAGAATAAAA

Product: putative DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKLKELELVVRDTVIKYDGREKVIDNFLIESTKKQHNKPEAFEKLLFNYFSLFKDEKERLISILLDTKNKIIGIDLVSIG
TLNSSLVHPRELFRKAILAGANSIIIAHNHPSNSTEPSSADIAMAKRLEKCGDILGIPLLDSLIIAFDSTPEKKGRLLSM
RQNQDF

Sequences:

>Translated_166_residues
MKLKELELVVRDTVIKYDGREKVIDNFLIESTKKQHNKPEAFEKLLFNYFSLFKDEKERLISILLDTKNKIIGIDLVSIG
TLNSSLVHPRELFRKAILAGANSIIIAHNHPSNSTEPSSADIAMAKRLEKCGDILGIPLLDSLIIAFDSTPEKKGRLLSM
RQNQDF
>Mature_166_residues
MKLKELELVVRDTVIKYDGREKVIDNFLIESTKKQHNKPEAFEKLLFNYFSLFKDEKERLISILLDTKNKIIGIDLVSIG
TLNSSLVHPRELFRKAILAGANSIIIAHNHPSNSTEPSSADIAMAKRLEKCGDILGIPLLDSLIIAFDSTPEKKGRLLSM
RQNQDF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=95, Percent_Identity=38.9473684210526, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI2367100, Length=91, Percent_Identity=37.3626373626374, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1788997, Length=91, Percent_Identity=35.1648351648352, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788312, Length=125, Percent_Identity=32, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 18791; Mature: 18791

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKELELVVRDTVIKYDGREKVIDNFLIESTKKQHNKPEAFEKLLFNYFSLFKDEKERL
CCHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ISILLDTKNKIIGIDLVSIGTLNSSLVHPRELFRKAILAGANSIIIAHNHPSNSTEPSSA
HHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHH
DIAMAKRLEKCGDILGIPLLDSLIIAFDSTPEKKGRLLSMRQNQDF
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MKLKELELVVRDTVIKYDGREKVIDNFLIESTKKQHNKPEAFEKLLFNYFSLFKDEKERL
CCHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ISILLDTKNKIIGIDLVSIGTLNSSLVHPRELFRKAILAGANSIIIAHNHPSNSTEPSSA
HHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHH
DIAMAKRLEKCGDILGIPLLDSLIIAFDSTPEKKGRLLSMRQNQDF
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA