| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is cshA [H]
Identifier: 169630612
GI number: 169630612
Start: 3577642
End: 3579114
Strand: Direct
Name: cshA [H]
Synonym: MAB_3531
Alternate gene names: 169630612
Gene position: 3577642-3579114 (Clockwise)
Preceding gene: 169630610
Following gene: 169630613
Centisome position: 70.6
GC content: 68.5
Gene sequence:
>1473_bases ATGAGCCACATCGAACACACCTTTGCCCAGCTGGGCGTGCGCAAGGAAATAGCCCGGGCACTGCGCGAGGCCGGGATTGA GCATCCGTTTGCCATCCAGGAACTGACACTCCCCCTTGCCCTGGCCGGCTCCGACCTCATCGGGCAGGCCCGCACCGGCA TGGGCAAGACGTACGCGTTCGGCGTCCCACTGCTGCACCGCATCGCCACCGGTGTCGAAGACCGGCCGCTCAACGGCACC CCGCGGGCCCTGGTCGTGGTGCCCACCCGCGAGCTGTGCATCCAGGTTTACGAAGACCTGACCAAGGCCTCCAAGTACCT GTCCGCGGGCGACCGCGACTTCACCGTCGTCTCCATCTACGGAGGACGGCCCTACGAGCCTCAGATCGAGGCGCTGCGCG CCGGAGCCGACGTAGTCGTCGGAACCCCGGGCCGCCTGCTGGACCTGGCCCAGCAGGGGCACCTGCAGCTCGGCGGATTG GCCATGCTGGTCCTCGACGAAGCCGACGAAATGCTGGACCTGGGCTTCCTGCCCGATATCGAACGCATCCTGGCCCTGGC GCCGTCCGCCGATGCGGGCCGCCAGTCGATGCTGTTCTCGGCGACCATGCCGGACCCGATCATCACCTTGGCTCGCACCT TCATGAACCGCCCGACGCACATTCGCGCCGAGGACCCGCAGGCCTCCTCGGTGCACGACTCCACGGAGCAGTTCGTGTAC CGCGCGCACGCGCTGGACAAGATCGAATTGGTCAGCCGGATTCTGCAGGCCGACGGGCGGGGCGCCACCATGATCTTCAC CCGCACCAAGCGCACCGCCCAGAAGGTTTCCGACGAGCTGGCCGAGCGTGGCTTCGCGGTCGGCGCTGTGCACGGTGACC TTGGACAGATCGCTCGGGAAAAGGCGCTGACATCTTTCCGGTCCGGTCAGATCAACGTGCTGGTGGCCACCGACGTGGCC GCCCGCGGAATCGACATCGACGACGTCACGCACGTCATCAACTACCAGTGCCCCGAGGACGACAAGACCTACGTGCACCG CATCGGCCGCACCGGCCGCGCCGGCCGTACCGGTATCGCGGTCACCCTGGTCGACTGGGACGACATCGCACGCTGGCAGC TGATCGACAAGGCCCTCGGCCTCGGTGTACCCGAGCCCGACGAAACCTATTCCACCTCGCCGCATTTGTTCACCGAGCTG AACATCCCGGCCGACGTCACCGGCTCAATCGGCGAGAAGTTCTCCGGCGGCCCGAAGCGTCGCGAGCCACGCGGTGAGCG CGCCGAGGGCGAGAAACCCAAGCGCACCCGGACCCGCCGCCGTACCCGCGCGGGCCAGCCCACCGACGAGTCGGCTGCCG AGGCACCCGCACCAGAGGCGGCCACCGCGGACGGAGATCAGCAAGCCCCCGCTCGCCGTCGTCGCCGTCGTCGCCGCCCC AACGCCACCGCCGCGACCACCGCCTCGGCGTGA
Upstream 100 bases:
>100_bases GGCGCCCTCGCCGCTCGCTGCGAGCCGGCCCCTTGGAATCCTAGGAATCCGACCTACCGATCGTGCGCGCTGAGCGAAAC ACGAAAGGCACGTACCACAC
Downstream 100 bases:
>100_bases TCGCACCGGAGCGGCGCACCCGAGCCGACATCATTGCCGCGGCGGTGATCGCCGTCGTGGTAGCCGTTACCGGCACAACG ATTTGGTGGACCAGCGACGC
Product: ATP-dependent DEAD-box RNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 490; Mature: 489
Protein sequence:
>490_residues MSHIEHTFAQLGVRKEIARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAFGVPLLHRIATGVEDRPLNGT PRALVVVPTRELCIQVYEDLTKASKYLSAGDRDFTVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLAQQGHLQLGGL AMLVLDEADEMLDLGFLPDIERILALAPSADAGRQSMLFSATMPDPIITLARTFMNRPTHIRAEDPQASSVHDSTEQFVY RAHALDKIELVSRILQADGRGATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALTSFRSGQINVLVATDVA ARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTLVDWDDIARWQLIDKALGLGVPEPDETYSTSPHLFTEL NIPADVTGSIGEKFSGGPKRREPRGERAEGEKPKRTRTRRRTRAGQPTDESAAEAPAPEAATADGDQQAPARRRRRRRRP NATAATTASA
Sequences:
>Translated_490_residues MSHIEHTFAQLGVRKEIARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAFGVPLLHRIATGVEDRPLNGT PRALVVVPTRELCIQVYEDLTKASKYLSAGDRDFTVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLAQQGHLQLGGL AMLVLDEADEMLDLGFLPDIERILALAPSADAGRQSMLFSATMPDPIITLARTFMNRPTHIRAEDPQASSVHDSTEQFVY RAHALDKIELVSRILQADGRGATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALTSFRSGQINVLVATDVA ARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTLVDWDDIARWQLIDKALGLGVPEPDETYSTSPHLFTEL NIPADVTGSIGEKFSGGPKRREPRGERAEGEKPKRTRTRRRTRAGQPTDESAAEAPAPEAATADGDQQAPARRRRRRRRP NATAATTASA >Mature_489_residues SHIEHTFAQLGVRKEIARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAFGVPLLHRIATGVEDRPLNGTP RALVVVPTRELCIQVYEDLTKASKYLSAGDRDFTVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLAQQGHLQLGGLA MLVLDEADEMLDLGFLPDIERILALAPSADAGRQSMLFSATMPDPIITLARTFMNRPTHIRAEDPQASSVHDSTEQFVYR AHALDKIELVSRILQADGRGATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALTSFRSGQINVLVATDVAA RGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTLVDWDDIARWQLIDKALGLGVPEPDETYSTSPHLFTELN IPADVTGSIGEKFSGGPKRREPRGERAEGEKPKRTRTRRRTRAGQPTDESAAEAPAPEAATADGDQQAPARRRRRRRRPN ATAATTASA
Specific function: May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. Unwinds dsRNA in both 5'- and 3'-directions and shows RNA-dependent ATPase activity [H]
COG id: COG0513
COG function: function code LKJ; Superfamily II DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm, nucleoid [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI50659095, Length=401, Percent_Identity=36.6583541147132, Blast_Score=256, Evalue=5e-68, Organism=Homo sapiens, GI13129006, Length=390, Percent_Identity=35.8974358974359, Blast_Score=236, Evalue=3e-62, Organism=Homo sapiens, GI222352149, Length=423, Percent_Identity=34.2789598108747, Blast_Score=231, Evalue=9e-61, Organism=Homo sapiens, GI45446747, Length=360, Percent_Identity=37.5, Blast_Score=229, Evalue=3e-60, Organism=Homo sapiens, GI45446743, Length=360, Percent_Identity=37.5, Blast_Score=229, Evalue=3e-60, Organism=Homo sapiens, GI301171467, Length=436, Percent_Identity=36.4678899082569, Blast_Score=229, Evalue=5e-60, Organism=Homo sapiens, GI169881239, Length=437, Percent_Identity=37.070938215103, Blast_Score=229, Evalue=6e-60, Organism=Homo sapiens, GI13514809, Length=437, Percent_Identity=37.070938215103, Blast_Score=229, Evalue=6e-60, Organism=Homo sapiens, GI41327771, Length=389, Percent_Identity=35.2185089974293, Blast_Score=226, Evalue=4e-59, Organism=Homo sapiens, GI87196351, Length=377, Percent_Identity=38.4615384615385, Blast_Score=224, Evalue=1e-58, Organism=Homo sapiens, GI301171475, Length=377, Percent_Identity=38.4615384615385, Blast_Score=224, Evalue=1e-58, Organism=Homo sapiens, GI13518015, Length=364, Percent_Identity=36.5384615384615, Blast_Score=223, Evalue=4e-58, Organism=Homo sapiens, GI262118318, Length=366, Percent_Identity=36.8852459016393, Blast_Score=223, Evalue=4e-58, Organism=Homo sapiens, GI216548263, Length=364, Percent_Identity=36.5384615384615, Blast_Score=223, Evalue=4e-58, Organism=Homo sapiens, GI262231852, Length=364, Percent_Identity=36.5384615384615, Blast_Score=222, Evalue=5e-58, Organism=Homo sapiens, GI224593278, Length=374, Percent_Identity=36.8983957219251, Blast_Score=218, Evalue=7e-57, Organism=Homo sapiens, GI41327773, Length=491, Percent_Identity=31.3645621181263, Blast_Score=216, Evalue=4e-56, Organism=Homo sapiens, GI4758138, Length=373, Percent_Identity=34.8525469168901, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI21071032, Length=362, Percent_Identity=35.6353591160221, Blast_Score=213, Evalue=3e-55, Organism=Homo sapiens, GI7661920, Length=363, Percent_Identity=34.1597796143251, Blast_Score=212, Evalue=7e-55, Organism=Homo sapiens, GI148613856, Length=365, Percent_Identity=36.986301369863, Blast_Score=212, Evalue=8e-55, Organism=Homo sapiens, GI38201710, Length=365, Percent_Identity=36.986301369863, Blast_Score=212, Evalue=8e-55, Organism=Homo sapiens, GI55749865, Length=350, Percent_Identity=33.7142857142857, Blast_Score=210, Evalue=3e-54, Organism=Homo sapiens, GI164664518, Length=378, Percent_Identity=32.010582010582, Blast_Score=202, Evalue=5e-52, Organism=Homo sapiens, GI21040371, Length=392, Percent_Identity=31.6326530612245, Blast_Score=199, Evalue=4e-51, Organism=Homo sapiens, GI20149629, Length=382, Percent_Identity=34.8167539267016, Blast_Score=198, Evalue=8e-51, Organism=Homo sapiens, GI164419743, Length=377, Percent_Identity=32.3607427055703, Blast_Score=196, Evalue=4e-50, Organism=Homo sapiens, GI51094101, Length=377, Percent_Identity=32.3607427055703, Blast_Score=196, Evalue=4e-50, Organism=Homo sapiens, GI4758112, Length=385, Percent_Identity=31.4285714285714, Blast_Score=194, Evalue=2e-49, Organism=Homo sapiens, GI18375623, Length=385, Percent_Identity=31.4285714285714, Blast_Score=194, Evalue=2e-49, Organism=Homo sapiens, GI31542656, Length=402, Percent_Identity=34.5771144278607, Blast_Score=193, Evalue=3e-49, Organism=Homo sapiens, GI83700235, Length=369, Percent_Identity=32.520325203252, Blast_Score=178, Evalue=8e-45, Organism=Homo sapiens, GI188035877, Length=370, Percent_Identity=31.3513513513514, Blast_Score=178, Evalue=9e-45, Organism=Homo sapiens, GI4503529, Length=369, Percent_Identity=31.7073170731707, Blast_Score=176, Evalue=3e-44, Organism=Homo sapiens, GI13514831, Length=364, Percent_Identity=32.1428571428571, Blast_Score=176, Evalue=4e-44, Organism=Homo sapiens, GI38327634, Length=351, Percent_Identity=32.7635327635328, Blast_Score=168, Evalue=1e-41, Organism=Homo sapiens, GI41327779, Length=359, Percent_Identity=32.3119777158774, Blast_Score=165, Evalue=1e-40, Organism=Homo sapiens, GI41327776, Length=382, Percent_Identity=31.6753926701571, Blast_Score=163, Evalue=3e-40, Organism=Homo sapiens, GI6005743, Length=370, Percent_Identity=31.0810810810811, Blast_Score=163, Evalue=4e-40, Organism=Homo sapiens, GI256223453, Length=363, Percent_Identity=28.6501377410468, Blast_Score=162, Evalue=7e-40, Organism=Homo sapiens, GI164419732, Length=360, Percent_Identity=32.5, Blast_Score=160, Evalue=2e-39, Organism=Homo sapiens, GI8922886, Length=370, Percent_Identity=30.8108108108108, Blast_Score=160, Evalue=2e-39, Organism=Homo sapiens, GI38569505, Length=372, Percent_Identity=30.1075268817204, Blast_Score=159, Evalue=4e-39, Organism=Homo sapiens, GI38569503, Length=372, Percent_Identity=30.1075268817204, Blast_Score=159, Evalue=6e-39, Organism=Homo sapiens, GI62241022, Length=352, Percent_Identity=32.1022727272727, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI9506931, Length=393, Percent_Identity=31.0432569974555, Blast_Score=156, Evalue=5e-38, Organism=Homo sapiens, GI4826686, Length=361, Percent_Identity=31.3019390581717, Blast_Score=149, Evalue=7e-36, Organism=Homo sapiens, GI62241024, Length=344, Percent_Identity=31.1046511627907, Blast_Score=149, Evalue=7e-36, Organism=Homo sapiens, GI17505907, Length=384, Percent_Identity=28.3854166666667, Blast_Score=142, Evalue=7e-34, Organism=Homo sapiens, GI154759257, Length=424, Percent_Identity=29.9528301886792, Blast_Score=126, Evalue=4e-29, Organism=Homo sapiens, GI9966805, Length=334, Percent_Identity=28.7425149700599, Blast_Score=126, Evalue=5e-29, Organism=Homo sapiens, GI256773275, Length=386, Percent_Identity=29.0155440414508, Blast_Score=122, Evalue=5e-28, Organism=Homo sapiens, GI20336298, Length=199, Percent_Identity=32.6633165829146, Blast_Score=103, Evalue=5e-22, Organism=Escherichia coli, GI87082221, Length=385, Percent_Identity=42.0779220779221, Blast_Score=294, Evalue=9e-81, Organism=Escherichia coli, GI1787016, Length=395, Percent_Identity=41.0126582278481, Blast_Score=278, Evalue=7e-76, Organism=Escherichia coli, GI1790214, Length=427, Percent_Identity=36.768149882904, Blast_Score=255, Evalue=6e-69, Organism=Escherichia coli, GI1787605, Length=403, Percent_Identity=36.4764267990074, Blast_Score=223, Evalue=2e-59, Organism=Escherichia coli, GI1788930, Length=382, Percent_Identity=36.3874345549738, Blast_Score=202, Evalue=3e-53, Organism=Caenorhabditis elegans, GI17510307, Length=373, Percent_Identity=39.6782841823056, Blast_Score=246, Evalue=2e-65, Organism=Caenorhabditis elegans, GI17510309, Length=373, Percent_Identity=39.6782841823056, Blast_Score=246, Evalue=2e-65, Organism=Caenorhabditis elegans, GI71995514, Length=373, Percent_Identity=39.6782841823056, Blast_Score=246, Evalue=2e-65, Organism=Caenorhabditis elegans, GI32565321, Length=393, Percent_Identity=36.8956743002545, Blast_Score=230, Evalue=1e-60, Organism=Caenorhabditis elegans, GI71995718, Length=373, Percent_Identity=38.3378016085791, Blast_Score=229, Evalue=2e-60, Organism=Caenorhabditis elegans, GI17537549, Length=388, Percent_Identity=36.5979381443299, Blast_Score=226, Evalue=1e-59, Organism=Caenorhabditis elegans, GI86570094, Length=362, Percent_Identity=36.7403314917127, Blast_Score=222, Evalue=4e-58, Organism=Caenorhabditis elegans, GI115533224, Length=417, Percent_Identity=34.7721822541966, Blast_Score=218, Evalue=6e-57, Organism=Caenorhabditis elegans, GI17510559, Length=394, Percent_Identity=34.2639593908629, Blast_Score=212, Evalue=3e-55, Organism=Caenorhabditis elegans, GI71995724, Length=370, Percent_Identity=33.7837837837838, Blast_Score=212, Evalue=3e-55, Organism=Caenorhabditis elegans, GI17507121, Length=370, Percent_Identity=33.7837837837838, Blast_Score=212, Evalue=3e-55, Organism=Caenorhabditis elegans, GI17552642, Length=363, Percent_Identity=35.5371900826446, Blast_Score=210, Evalue=1e-54, Organism=Caenorhabditis elegans, GI71987143, Length=388, Percent_Identity=32.7319587628866, Blast_Score=209, Evalue=3e-54, Organism=Caenorhabditis elegans, GI71982858, Length=392, Percent_Identity=31.3775510204082, Blast_Score=205, Evalue=4e-53, Organism=Caenorhabditis elegans, GI17555296, Length=385, Percent_Identity=35.0649350649351, Blast_Score=204, Evalue=1e-52, Organism=Caenorhabditis elegans, GI17507945, Length=347, Percent_Identity=36.8876080691643, Blast_Score=204, Evalue=1e-52, Organism=Caenorhabditis elegans, GI115532548, Length=389, Percent_Identity=33.4190231362468, Blast_Score=195, Evalue=4e-50, Organism=Caenorhabditis elegans, GI17552114, Length=361, Percent_Identity=30.4709141274238, Blast_Score=195, Evalue=6e-50, Organism=Caenorhabditis elegans, GI115532546, Length=389, Percent_Identity=33.4190231362468, Blast_Score=194, Evalue=1e-49, Organism=Caenorhabditis elegans, GI71999646, Length=483, Percent_Identity=29.8136645962733, Blast_Score=189, Evalue=2e-48, Organism=Caenorhabditis elegans, GI71999644, Length=483, Percent_Identity=29.399585921325, Blast_Score=189, Evalue=4e-48, Organism=Caenorhabditis elegans, GI17507877, Length=380, Percent_Identity=32.8947368421053, Blast_Score=186, Evalue=2e-47, Organism=Caenorhabditis elegans, GI17507881, Length=386, Percent_Identity=31.8652849740933, Blast_Score=180, Evalue=1e-45, Organism=Caenorhabditis elegans, GI17507879, Length=380, Percent_Identity=31.8421052631579, Blast_Score=176, Evalue=2e-44, Organism=Caenorhabditis elegans, GI193208216, Length=388, Percent_Identity=32.4742268041237, Blast_Score=174, Evalue=7e-44, Organism=Caenorhabditis elegans, GI17536099, Length=388, Percent_Identity=32.4742268041237, Blast_Score=169, Evalue=3e-42, Organism=Caenorhabditis elegans, GI17536101, Length=388, Percent_Identity=32.4742268041237, Blast_Score=168, Evalue=5e-42, Organism=Caenorhabditis elegans, GI17536103, Length=388, Percent_Identity=32.4742268041237, Blast_Score=168, Evalue=6e-42, Organism=Caenorhabditis elegans, GI17509811, Length=349, Percent_Identity=29.7994269340974, Blast_Score=166, Evalue=2e-41, Organism=Caenorhabditis elegans, GI193206561, Length=368, Percent_Identity=28.2608695652174, Blast_Score=158, Evalue=7e-39, Organism=Caenorhabditis elegans, GI17507641, Length=390, Percent_Identity=30.7692307692308, Blast_Score=149, Evalue=3e-36, Organism=Caenorhabditis elegans, GI32564046, Length=378, Percent_Identity=30.952380952381, Blast_Score=140, Evalue=1e-33, Organism=Caenorhabditis elegans, GI17505370, Length=356, Percent_Identity=30.0561797752809, Blast_Score=138, Evalue=8e-33, Organism=Caenorhabditis elegans, GI71990816, Length=375, Percent_Identity=26.4, Blast_Score=134, Evalue=1e-31, Organism=Caenorhabditis elegans, GI25148203, Length=439, Percent_Identity=25.7403189066059, Blast_Score=130, Evalue=2e-30, Organism=Caenorhabditis elegans, GI25148291, Length=333, Percent_Identity=28.5285285285285, Blast_Score=129, Evalue=4e-30, Organism=Caenorhabditis elegans, GI17556951, Length=353, Percent_Identity=26.9121813031161, Blast_Score=129, Evalue=4e-30, Organism=Caenorhabditis elegans, GI71982862, Length=221, Percent_Identity=33.4841628959276, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17508543, Length=393, Percent_Identity=26.2086513994911, Blast_Score=120, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17553716, Length=381, Percent_Identity=25.9842519685039, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI71997889, Length=375, Percent_Identity=28.2666666666667, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71987152, Length=110, Percent_Identity=40, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI32564293, Length=100, Percent_Identity=38, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25145561, Length=355, Percent_Identity=24.7887323943662, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6325138, Length=369, Percent_Identity=38.7533875338753, Blast_Score=241, Evalue=3e-64, Organism=Saccharomyces cerevisiae, GI6324778, Length=358, Percent_Identity=39.6648044692737, Blast_Score=236, Evalue=6e-63, Organism=Saccharomyces cerevisiae, GI6324217, Length=362, Percent_Identity=38.121546961326, Blast_Score=233, Evalue=8e-62, Organism=Saccharomyces cerevisiae, GI6321360, Length=341, Percent_Identity=40.4692082111437, Blast_Score=228, Evalue=2e-60, Organism=Saccharomyces cerevisiae, GI6320224, Length=388, Percent_Identity=34.020618556701, Blast_Score=218, Evalue=2e-57, Organism=Saccharomyces cerevisiae, GI6321856, Length=380, Percent_Identity=36.0526315789474, Blast_Score=211, Evalue=2e-55, Organism=Saccharomyces cerevisiae, GI6323021, Length=369, Percent_Identity=33.8753387533875, Blast_Score=202, Evalue=7e-53, Organism=Saccharomyces cerevisiae, GI6320041, Length=380, Percent_Identity=31.3157894736842, Blast_Score=202, Evalue=1e-52, Organism=Saccharomyces cerevisiae, GI6320449, Length=358, Percent_Identity=35.195530726257, Blast_Score=193, Evalue=4e-50, Organism=Saccharomyces cerevisiae, GI6320173, Length=438, Percent_Identity=29.9086757990868, Blast_Score=187, Evalue=2e-48, Organism=Saccharomyces cerevisiae, GI6322912, Length=381, Percent_Identity=32.5459317585302, Blast_Score=186, Evalue=8e-48, Organism=Saccharomyces cerevisiae, GI6322323, Length=381, Percent_Identity=32.5459317585302, Blast_Score=186, Evalue=8e-48, Organism=Saccharomyces cerevisiae, GI6324620, Length=385, Percent_Identity=31.9480519480519, Blast_Score=182, Evalue=1e-46, Organism=Saccharomyces cerevisiae, GI6322427, Length=367, Percent_Identity=32.425068119891, Blast_Score=181, Evalue=2e-46, Organism=Saccharomyces cerevisiae, GI6320119, Length=364, Percent_Identity=30.2197802197802, Blast_Score=179, Evalue=7e-46, Organism=Saccharomyces cerevisiae, GI6323947, Length=354, Percent_Identity=31.638418079096, Blast_Score=169, Evalue=1e-42, Organism=Saccharomyces cerevisiae, GI6321963, Length=414, Percent_Identity=30.9178743961353, Blast_Score=167, Evalue=4e-42, Organism=Saccharomyces cerevisiae, GI6319714, Length=375, Percent_Identity=29.6, Blast_Score=166, Evalue=7e-42, Organism=Saccharomyces cerevisiae, GI6320400, Length=407, Percent_Identity=27.2727272727273, Blast_Score=151, Evalue=3e-37, Organism=Saccharomyces cerevisiae, GI6319618, Length=405, Percent_Identity=27.1604938271605, Blast_Score=149, Evalue=8e-37, Organism=Saccharomyces cerevisiae, GI6321111, Length=369, Percent_Identity=32.2493224932249, Blast_Score=145, Evalue=1e-35, Organism=Saccharomyces cerevisiae, GI6321267, Length=369, Percent_Identity=29.5392953929539, Blast_Score=137, Evalue=5e-33, Organism=Saccharomyces cerevisiae, GI6323306, Length=319, Percent_Identity=28.5266457680251, Blast_Score=129, Evalue=1e-30, Organism=Saccharomyces cerevisiae, GI6324366, Length=353, Percent_Identity=26.628895184136, Blast_Score=114, Evalue=3e-26, Organism=Saccharomyces cerevisiae, GI6322876, Length=221, Percent_Identity=29.8642533936652, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24584994, Length=391, Percent_Identity=37.0843989769821, Blast_Score=235, Evalue=6e-62, Organism=Drosophila melanogaster, GI24662330, Length=359, Percent_Identity=37.0473537604457, Blast_Score=230, Evalue=1e-60, Organism=Drosophila melanogaster, GI21355075, Length=368, Percent_Identity=35.5978260869565, Blast_Score=225, Evalue=6e-59, Organism=Drosophila melanogaster, GI28574962, Length=361, Percent_Identity=37.1191135734072, Blast_Score=221, Evalue=6e-58, Organism=Drosophila melanogaster, GI24584399, Length=368, Percent_Identity=36.6847826086957, Blast_Score=221, Evalue=7e-58, Organism=Drosophila melanogaster, GI24642151, Length=365, Percent_Identity=36.4383561643836, Blast_Score=219, Evalue=4e-57, Organism=Drosophila melanogaster, GI24644479, Length=367, Percent_Identity=35.149863760218, Blast_Score=215, Evalue=5e-56, Organism=Drosophila melanogaster, GI281361218, Length=366, Percent_Identity=35.2459016393443, Blast_Score=214, Evalue=7e-56, Organism=Drosophila melanogaster, GI24644481, Length=366, Percent_Identity=35.2459016393443, Blast_Score=214, Evalue=7e-56, Organism=Drosophila melanogaster, GI24644483, Length=366, Percent_Identity=35.2459016393443, Blast_Score=214, Evalue=8e-56, Organism=Drosophila melanogaster, GI24644487, Length=366, Percent_Identity=35.2459016393443, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI45551833, Length=366, Percent_Identity=35.2459016393443, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI24644485, Length=366, Percent_Identity=35.2459016393443, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI17977678, Length=362, Percent_Identity=36.7403314917127, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI21356161, Length=364, Percent_Identity=37.0879120879121, Blast_Score=211, Evalue=9e-55, Organism=Drosophila melanogaster, GI17985987, Length=361, Percent_Identity=37.6731301939058, Blast_Score=209, Evalue=2e-54, Organism=Drosophila melanogaster, GI28575014, Length=386, Percent_Identity=33.419689119171, Blast_Score=206, Evalue=2e-53, Organism=Drosophila melanogaster, GI18857967, Length=378, Percent_Identity=34.6560846560847, Blast_Score=206, Evalue=2e-53, Organism=Drosophila melanogaster, GI24645031, Length=364, Percent_Identity=34.0659340659341, Blast_Score=206, Evalue=3e-53, Organism=Drosophila melanogaster, GI24585582, Length=377, Percent_Identity=33.9522546419098, Blast_Score=194, Evalue=1e-49, Organism=Drosophila melanogaster, GI24583281, Length=410, Percent_Identity=30.2439024390244, Blast_Score=190, Evalue=2e-48, Organism=Drosophila melanogaster, GI24583279, Length=410, Percent_Identity=30.2439024390244, Blast_Score=189, Evalue=3e-48, Organism=Drosophila melanogaster, GI24581954, Length=392, Percent_Identity=31.3775510204082, Blast_Score=189, Evalue=5e-48, Organism=Drosophila melanogaster, GI24581952, Length=392, Percent_Identity=31.3775510204082, Blast_Score=189, Evalue=5e-48, Organism=Drosophila melanogaster, GI24581956, Length=392, Percent_Identity=31.3775510204082, Blast_Score=189, Evalue=5e-48, Organism=Drosophila melanogaster, GI24582080, Length=363, Percent_Identity=33.3333333333333, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI24582078, Length=363, Percent_Identity=33.3333333333333, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI17136248, Length=363, Percent_Identity=33.3333333333333, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI24582075, Length=363, Percent_Identity=33.3333333333333, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI17136814, Length=403, Percent_Identity=32.0099255583127, Blast_Score=181, Evalue=1e-45, Organism=Drosophila melanogaster, GI281365720, Length=321, Percent_Identity=34.2679127725857, Blast_Score=171, Evalue=1e-42, Organism=Drosophila melanogaster, GI20130173, Length=456, Percent_Identity=30.2631578947368, Blast_Score=167, Evalue=1e-41, Organism=Drosophila melanogaster, GI28571808, Length=365, Percent_Identity=30.958904109589, Blast_Score=167, Evalue=2e-41, Organism=Drosophila melanogaster, GI28571809, Length=365, Percent_Identity=30.958904109589, Blast_Score=167, Evalue=2e-41, Organism=Drosophila melanogaster, GI24642822, Length=377, Percent_Identity=30.7692307692308, Blast_Score=159, Evalue=3e-39, Organism=Drosophila melanogaster, GI17647335, Length=367, Percent_Identity=30.5177111716621, Blast_Score=158, Evalue=9e-39, Organism=Drosophila melanogaster, GI24666101, Length=377, Percent_Identity=29.973474801061, Blast_Score=149, Evalue=3e-36, Organism=Drosophila melanogaster, GI24643725, Length=409, Percent_Identity=27.1393643031785, Blast_Score=144, Evalue=1e-34, Organism=Drosophila melanogaster, GI24668515, Length=334, Percent_Identity=30.8383233532934, Blast_Score=138, Evalue=8e-33, Organism=Drosophila melanogaster, GI21355559, Length=365, Percent_Identity=30.6849315068493, Blast_Score=136, Evalue=3e-32, Organism=Drosophila melanogaster, GI17136666, Length=446, Percent_Identity=29.372197309417, Blast_Score=133, Evalue=3e-31, Organism=Drosophila melanogaster, GI19920478, Length=345, Percent_Identity=29.2753623188406, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI18859659, Length=223, Percent_Identity=32.2869955156951, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI28571338, Length=223, Percent_Identity=32.2869955156951, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI24640164, Length=357, Percent_Identity=25.2100840336134, Blast_Score=97, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR000629 - InterPro: IPR014014 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.13 [H]
Molecular weight: Translated: 53316; Mature: 53185
Theoretical pI: Translated: 7.17; Mature: 7.17
Prosite motif: PS00039 DEAD_ATP_HELICASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHIEHTFAQLGVRKEIARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAF CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEH GVPLLHRIATGVEDRPLNGTPRALVVVPTRELCIQVYEDLTKASKYLSAGDRDFTVVSIY HHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE GGRPYEPQIEALRAGADVVVGTPGRLLDLAQQGHLQLGGLAMLVLDEADEMLDLGFLPDI CCCCCCHHHHHHHCCCCEEECCCHHHHHHHHCCCEEECCEEEEEECCHHHHHHCCCCCCH ERILALAPSADAGRQSMLFSATMPDPIITLARTFMNRPTHIRAEDPQASSVHDSTEQFVY HHHHHCCCCCCCCCHHEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHH RAHALDKIELVSRILQADGRGATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIARE HHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH KALTSFRSGQINVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIA HHHHHHCCCCEEEEEEECHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCEE VTLVDWDDIARWQLIDKALGLGVPEPDETYSTSPHLFTELNIPADVTGSIGEKFSGGPKR EEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCCCC REPRGERAEGEKPKRTRTRRRTRAGQPTDESAAEAPAPEAATADGDQQAPARRRRRRRRP CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHCCC NATAATTASA CCCCCCCCCC >Mature Secondary Structure SHIEHTFAQLGVRKEIARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAF CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEH GVPLLHRIATGVEDRPLNGTPRALVVVPTRELCIQVYEDLTKASKYLSAGDRDFTVVSIY HHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE GGRPYEPQIEALRAGADVVVGTPGRLLDLAQQGHLQLGGLAMLVLDEADEMLDLGFLPDI CCCCCCHHHHHHHCCCCEEECCCHHHHHHHHCCCEEECCEEEEEECCHHHHHHCCCCCCH ERILALAPSADAGRQSMLFSATMPDPIITLARTFMNRPTHIRAEDPQASSVHDSTEQFVY HHHHHCCCCCCCCCHHEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHH RAHALDKIELVSRILQADGRGATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIARE HHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH KALTSFRSGQINVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIA HHHHHHCCCCEEEEEEECHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCEE VTLVDWDDIARWQLIDKALGLGVPEPDETYSTSPHLFTELNIPADVTGSIGEKFSGGPKR EEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCCCC REPRGERAEGEKPKRTRTRRRTRAGQPTDESAAEAPAPEAATADGDQQAPARRRRRRRRP CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHCCC NATAATTASA CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA