Click here to switch to the map view.

The map label for this gene is clpC [H]

Identifier: 169630572

GI number: 169630572

Start: 3533866

End: 3534312

Strand: Direct

Name: clpC [H]

Synonym: MAB_3491

Alternate gene names: 169630572

Gene position: 3533866-3534312 (Clockwise)

Preceding gene: 169630569

Following gene: 169630574

Centisome position: 69.74

GC content: 64.43

Gene sequence:

>447_bases
ATGTTCCATCTGTTCAACGAGCGCTCTCGGCAGGTCATCGTGATCGCACAGGAAGAAGCGCGCGAACGGCAGCACAACTA
CCTCGGAGCAGAGCACCTCCTGTTGGGTCTGGTGGGCGAAGGGACCGGGCTCGGCGCCCGTCTGCTTGCCACCGCGGGCG
TCCGGTTCGAAAACGGGGCACGGGTGATTCAGCAACTCGTCCCGCTGGGCCAGGAACCACCCGCAGAGAAGATGTCGTTC
ACGCCAGGCGCGCAACGCACACTTGAACTGGCCGTGACCGCCTCGGAGAGCAGGCGGCACACGGAGATCTGCACCGGGCA
CCTACTTCTGGGCCTCGTCGACGCCGCGGATCCCACCATCATCCAGATATGGGAGCGGCTCAGCGTCGATGTTCTCGACC
TGTGGGACAACGTCCGGGCACACCTGGACGAGAACCTCGGCGACTAG

Upstream 100 bases:

>100_bases
CTGTTCCAGCCAACACCTTCAGAGCGGTCATGCCGTGACAGTAGCTCATCGCCGCATCCGCTCGGGCAAGATGTACGTCG
AGGCGGCGATAGGGAGGGTC

Downstream 100 bases:

>100_bases
GTGCGCACAGGTCGCGACTGCGCGATGCTTCGTTCGCCGGCGCTCGCGGCCCGTCGCAGCGCCCCGTATTCACCGATATA
CCCAGCCACACTGCCCACCG

Product: putative ATP-dependent Clp protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MFHLFNERSRQVIVIAQEEARERQHNYLGAEHLLLGLVGEGTGLGARLLATAGVRFENGARVIQQLVPLGQEPPAEKMSF
TPGAQRTLELAVTASESRRHTEICTGHLLLGLVDAADPTIIQIWERLSVDVLDLWDNVRAHLDENLGD

Sequences:

>Translated_148_residues
MFHLFNERSRQVIVIAQEEARERQHNYLGAEHLLLGLVGEGTGLGARLLATAGVRFENGARVIQQLVPLGQEPPAEKMSF
TPGAQRTLELAVTASESRRHTEICTGHLLLGLVDAADPTIIQIWERLSVDVLDLWDNVRAHLDENLGD
>Mature_148_residues
MFHLFNERSRQVIVIAQEEARERQHNYLGAEHLLLGLVGEGTGLGARLLATAGVRFENGARVIQQLVPLGQEPPAEKMSF
TPGAQRTLELAVTASESRRHTEICTGHLLLGLVDAADPTIIQIWERLSVDVLDLWDNVRAHLDENLGD

Specific function: Unknown

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 UVR domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR004176
- InterPro:   IPR023150
- InterPro:   IPR001943 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small; PF02151 UVR [H]

EC number: NA

Molecular weight: Translated: 16381; Mature: 16381

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHLFNERSRQVIVIAQEEARERQHNYLGAEHLLLGLVGEGTGLGARLLATAGVRFENGA
CCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHH
RVIQQLVPLGQEPPAEKMSFTPGAQRTLELAVTASESRRHTEICTGHLLLGLVDAADPTI
HHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHH
IQIWERLSVDVLDLWDNVRAHLDENLGD
HHHHHHHCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFHLFNERSRQVIVIAQEEARERQHNYLGAEHLLLGLVGEGTGLGARLLATAGVRFENGA
CCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHH
RVIQQLVPLGQEPPAEKMSFTPGAQRTLELAVTASESRRHTEICTGHLLLGLVDAADPTI
HHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHH
IQIWERLSVDVLDLWDNVRAHLDENLGD
HHHHHHHCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]