Click here to switch to the map view.

The map label for this gene is ybiO [C]

Identifier: 169630558

GI number: 169630558

Start: 3517151

End: 3518203

Strand: Reverse

Name: ybiO [C]

Synonym: MAB_3477c

Alternate gene names: 169630558

Gene position: 3518203-3517151 (Counterclockwise)

Preceding gene: 169630559

Following gene: 169630557

Centisome position: 69.43

GC content: 62.87

Gene sequence:

>1053_bases
ATGATTAGAGCGGCCGAATTCAGCGCGGGCGGGCTGCGGCTGGCCGAACGCTGGAACTCCTTCTGGTCCAGCCAGATTGG
TCGTTGGCTGCTCGATAACGGTTTGCAGATCGTCATCGCGATTTTGGGTGCGATGATCCTGGTCCGCTTCATCAACTGGG
GCGCGCAGAAGATCACCCGCCGGTTGGATCGCTCGTTTACGCAGAGCGACGCGCTGGTGCGTTCGGAGGCCAGTAAGCAC
CGGCAGGCGCTGGCCTCGGTAATTTCCTGGATCATCGTGGTGCTGGTGGTCGTTCTTACCACCGTGCATGTCGTTGGGGT
GCTGGGGATTTCGGTGGGCGGATTGGCGGGTCCGGCCGCGGTGCTCGGTGGTGCGCTCGGTTTCGGCGCGCAGCGCGTGG
TCCAGGATTTGTTGAGCGGATTCTTTCTCATCACCGAAAAGCAGTACGGCTTTGGTGATCTGGTGGAGTTGTATGTGCAG
GGCCAAACCACCGAATCCCGGGGAACCGTCGAGGAAGTCACCCTGCGTGTCACCAAGCTGCGTTCAGGTGATGGTGAGGT
GATCACAATCCCCAACGGGCTCATCGTCAAGGCGGTCAACCTGTCCAAGGACTGGGCCCGTGCGGTGGTGGACATCCCGG
TGCCGACGAGCGTGGATCTGGCCCGGGTCAACGACGTGCTGTACGACGTCTGCCAGCAGGCGCTGGTGGATCGTGATCTC
TCGCAGCTGCTGCTTGACGCCCCGTCACTGATGGGCGTGGAGAGCATCGAGGTGGACCGCGTCAATGTGCGCATGGTGGC
GCGCACCCTGCCCGGCAAGCAGTTTGAGGTGGGCCGCCGCCTGCGTGCCAAGGTGATCGCCGCGCTGGCGAAGGCGGGTG
TCGCGTTGGTCGGGGACAGTCGACCGACGGTGCGGACCATGTCGTCGTCGGGTTCCGGCGAGCTCAAACGGGAGGGCAAG
CGCGAAGACGCCAAACGCGATGAAGTTAAACGTGAAGAGGAAGGCGTCGACACCAAGCCACAGCCGATCGTGCAGGCAGA
GGAGCTCACATGA

Upstream 100 bases:

>100_bases
GACCTTCGCACCGAGTACGAGGTGGGTAATCCCGCGGCGGTGCTCGACGGGGACATCGACGGATTCATCGAGGCGGGGAT
CCGGTGGCGCAACAGGCGCG

Downstream 100 bases:

>100_bases
GTGAACCTCGCCACGAGCCGTTCTGGGAGATGGCCCTGTCCCGCGCCAAGAAACTTCGCAAAAAAATCCGGTTCAGGACG
TCGACCGTCGTCCTTGTCCT

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MIRAAEFSAGGLRLAERWNSFWSSQIGRWLLDNGLQIVIAILGAMILVRFINWGAQKITRRLDRSFTQSDALVRSEASKH
RQALASVISWIIVVLVVVLTTVHVVGVLGISVGGLAGPAAVLGGALGFGAQRVVQDLLSGFFLITEKQYGFGDLVELYVQ
GQTTESRGTVEEVTLRVTKLRSGDGEVITIPNGLIVKAVNLSKDWARAVVDIPVPTSVDLARVNDVLYDVCQQALVDRDL
SQLLLDAPSLMGVESIEVDRVNVRMVARTLPGKQFEVGRRLRAKVIAALAKAGVALVGDSRPTVRTMSSSGSGELKREGK
REDAKRDEVKREEEGVDTKPQPIVQAEELT

Sequences:

>Translated_350_residues
MIRAAEFSAGGLRLAERWNSFWSSQIGRWLLDNGLQIVIAILGAMILVRFINWGAQKITRRLDRSFTQSDALVRSEASKH
RQALASVISWIIVVLVVVLTTVHVVGVLGISVGGLAGPAAVLGGALGFGAQRVVQDLLSGFFLITEKQYGFGDLVELYVQ
GQTTESRGTVEEVTLRVTKLRSGDGEVITIPNGLIVKAVNLSKDWARAVVDIPVPTSVDLARVNDVLYDVCQQALVDRDL
SQLLLDAPSLMGVESIEVDRVNVRMVARTLPGKQFEVGRRLRAKVIAALAKAGVALVGDSRPTVRTMSSSGSGELKREGK
REDAKRDEVKREEEGVDTKPQPIVQAEELT
>Mature_350_residues
MIRAAEFSAGGLRLAERWNSFWSSQIGRWLLDNGLQIVIAILGAMILVRFINWGAQKITRRLDRSFTQSDALVRSEASKH
RQALASVISWIIVVLVVVLTTVHVVGVLGISVGGLAGPAAVLGGALGFGAQRVVQDLLSGFFLITEKQYGFGDLVELYVQ
GQTTESRGTVEEVTLRVTKLRSGDGEVITIPNGLIVKAVNLSKDWARAVVDIPVPTSVDLARVNDVLYDVCQQALVDRDL
SQLLLDAPSLMGVESIEVDRVNVRMVARTLPGKQFEVGRRLRAKVIAALAKAGVALVGDSRPTVRTMSSSGSGELKREGK
REDAKRDEVKREEEGVDTKPQPIVQAEELT

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081787, Length=274, Percent_Identity=25.5474452554745, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR006685 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 38002; Mature: 38002

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRAAEFSAGGLRLAERWNSFWSSQIGRWLLDNGLQIVIAILGAMILVRFINWGAQKITR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
RLDRSFTQSDALVRSEASKHRQALASVISWIIVVLVVVLTTVHVVGVLGISVGGLAGPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VLGGALGFGAQRVVQDLLSGFFLITEKQYGFGDLVELYVQGQTTESRGTVEEVTLRVTKL
HHHHHHCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHE
RSGDGEVITIPNGLIVKAVNLSKDWARAVVDIPVPTSVDLARVNDVLYDVCQQALVDRDL
ECCCCCEEECCCCEEEEEECCCHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SQLLLDAPSLMGVESIEVDRVNVRMVARTLPGKQFEVGRRLRAKVIAALAKAGVALVGDS
HHHHHCCCHHCCCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEECCC
RPTVRTMSSSGSGELKREGKREDAKRDEVKREEEGVDTKPQPIVQAEELT
CCCEEEECCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIRAAEFSAGGLRLAERWNSFWSSQIGRWLLDNGLQIVIAILGAMILVRFINWGAQKITR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
RLDRSFTQSDALVRSEASKHRQALASVISWIIVVLVVVLTTVHVVGVLGISVGGLAGPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VLGGALGFGAQRVVQDLLSGFFLITEKQYGFGDLVELYVQGQTTESRGTVEEVTLRVTKL
HHHHHHCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHE
RSGDGEVITIPNGLIVKAVNLSKDWARAVVDIPVPTSVDLARVNDVLYDVCQQALVDRDL
ECCCCCEEECCCCEEEEEECCCHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SQLLLDAPSLMGVESIEVDRVNVRMVARTLPGKQFEVGRRLRAKVIAALAKAGVALVGDS
HHHHHCCCHHCCCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEECCC
RPTVRTMSSSGSGELKREGKREDAKRDEVKREEEGVDTKPQPIVQAEELT
CCCEEEECCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12948626; 8366043 [H]