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The map label for this gene is ydeS [H]

Identifier: 169630543

GI number: 169630543

Start: 3505982

End: 3506599

Strand: Reverse

Name: ydeS [H]

Synonym: MAB_3462c

Alternate gene names: 169630543

Gene position: 3506599-3505982 (Counterclockwise)

Preceding gene: 169630547

Following gene: 169630542

Centisome position: 69.2

GC content: 64.24

Gene sequence:

>618_bases
ATGAATGAGACGGTCGGACCTGGTGAGGTCGACACGCCACGCCGTCATTTCGGAAACCGGCATGGCCGCAGCGAGGCCGC
GCGTGAAGCGGTCCTGCACGCGGCCGACGACCTGCTGGTAGCCAGGGGTTATGCCGGAGTCACCATGGAAGGGATTGCGA
AGGCGGCCGGTGTCGCCAAGCAGACCGTCTATCGCTGGTGGAGTTCGAAGGTGGATGTCCTGATGGATGTCTTCCTCGAA
GATGCCGCGTGTCAATTGGATCCACCCGACCTCGGTGGGCTTGAGGCGGACCTGCGGCACCACCTGAGTGCGACTGCGCA
GTTTCTGGCGGCCGACGATGCCGGTGCGGTGTTCCGGGCCCTGATTGGCCAGTCGCAGCACGATGGGCAGCTCGCGGACG
ACTTCCGTGGGCGATACCTGCGCGAGCAGCAGGCCCGAGATCAGATTCCGATTGCGCGCGCGGTGGCGCGCGGAGAATTG
CCGGCTGACGTGGATGTCGCTCATGTGGCCGAGCAGCTGGTGGCACCGTTGTATTACCGCGTGATCGTCACGGGGGAGAC
GGTCGACGCCGCGTTTGTTGACAGGATTGTCGAGGATTTCTTGCGCCGCCGGGAATAA

Upstream 100 bases:

>100_bases
CGATGATGGCGGCGAATTTGGGTTCATGGAGTGTTGCGGTCATGAGCCTAGAATAGACGCAACGTCTCGTCTAATCTAGG
GTGGTGATTCGATGCACCCT

Downstream 100 bases:

>100_bases
TGTCAGCTCGATTGACATTATGGTGATTATGACCGAGACAGACCCCCATGATTTCCATGCCAATGTCATGTCGGAGATCC
GTGAAACGGGCAGAGCCAGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MNETVGPGEVDTPRRHFGNRHGRSEAAREAVLHAADDLLVARGYAGVTMEGIAKAAGVAKQTVYRWWSSKVDVLMDVFLE
DAACQLDPPDLGGLEADLRHHLSATAQFLAADDAGAVFRALIGQSQHDGQLADDFRGRYLREQQARDQIPIARAVARGEL
PADVDVAHVAEQLVAPLYYRVIVTGETVDAAFVDRIVEDFLRRRE

Sequences:

>Translated_205_residues
MNETVGPGEVDTPRRHFGNRHGRSEAAREAVLHAADDLLVARGYAGVTMEGIAKAAGVAKQTVYRWWSSKVDVLMDVFLE
DAACQLDPPDLGGLEADLRHHLSATAQFLAADDAGAVFRALIGQSQHDGQLADDFRGRYLREQQARDQIPIARAVARGEL
PADVDVAHVAEQLVAPLYYRVIVTGETVDAAFVDRIVEDFLRRRE
>Mature_205_residues
MNETVGPGEVDTPRRHFGNRHGRSEAAREAVLHAADDLLVARGYAGVTMEGIAKAAGVAKQTVYRWWSSKVDVLMDVFLE
DAACQLDPPDLGGLEADLRHHLSATAQFLAADDAGAVFRALIGQSQHDGQLADDFRGRYLREQQARDQIPIARAVARGEL
PADVDVAHVAEQLVAPLYYRVIVTGETVDAAFVDRIVEDFLRRRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22499; Mature: 22499

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETVGPGEVDTPRRHFGNRHGRSEAAREAVLHAADDLLVARGYAGVTMEGIAKAAGVAK
CCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QTVYRWWSSKVDVLMDVFLEDAACQLDPPDLGGLEADLRHHLSATAQFLAADDAGAVFRA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
LIGQSQHDGQLADDFRGRYLREQQARDQIPIARAVARGELPADVDVAHVAEQLVAPLYYR
HHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
VIVTGETVDAAFVDRIVEDFLRRRE
HHCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNETVGPGEVDTPRRHFGNRHGRSEAAREAVLHAADDLLVARGYAGVTMEGIAKAAGVAK
CCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QTVYRWWSSKVDVLMDVFLEDAACQLDPPDLGGLEADLRHHLSATAQFLAADDAGAVFRA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
LIGQSQHDGQLADDFRGRYLREQQARDQIPIARAVARGELPADVDVAHVAEQLVAPLYYR
HHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
VIVTGETVDAAFVDRIVEDFLRRRE
HHCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]