| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is 169630541
Identifier: 169630541
GI number: 169630541
Start: 3503826
End: 3505352
Strand: Reverse
Name: 169630541
Synonym: MAB_3460c
Alternate gene names: NA
Gene position: 3505352-3503826 (Counterclockwise)
Preceding gene: 169630542
Following gene: 169630539
Centisome position: 69.18
GC content: 62.54
Gene sequence:
>1527_bases ATGGTTGTCGGTGCGGTCGCCGCGTTTGTCATGGCCATCACGGGCTTTGGCTGGGCCGGATACAACACGGCGGTGGGTCA GATCATCACCTCGCATGTGCTTCCGGGTGTGCTCACTCCGGTGGGGCAAGACCAAAACATTCTGCTCATGGGGCTAGATA GCAGGCTTGATCAGAACGGGCAGCCGTTGCCGCAGGATATGTACGACGCATTGCACGCCGGTGATGAGACATCGGGCGGT TACAACGCGAATGTGTTGATCGTGGTCCACATTCCCGGCAACGGCGGCCCCATCAGTGCGGTGTCGATCCCGCGAGACGA TTATGTCAATCTTGTCGGCTGCCCCGGCTCGGTGTGCAAGGGCAAGGTCAAGCAGGCCTATGGATTTGCCTACCAGCAGG CGTTGGACGCCCAGGCGAACGGCAGCGCCGATGCTGCCGGTGCCAAAGATCTGACCGCCCGCGAACAGGCGGCGCGGGAG GCGGGGCGCAAGGCCCAGATTGACACGGTGAGTGAATTCCTGGGTGTGCAGATCGATCACTTCGTCGAAGTGACGCTCGC CGCGTTCTTTCAGATCGCCAAGACCGTGCAGCCGATCGCGGTCTGCCTCAACCACGACACGATCGATGAGTTCTCCGGCG CCAACTTCCATGAAGGTGTTCAACAGATCGACGCATCGCAAGCGATGGCTTTCGTCCGGCAGCGCCGGGACGAAAACGAC GGTTCGTTCACCGATATGGACCGCACCCGTCGTCAGCAGGCATTTCTGGTATCGCTGCTCGCCGCGGTGCGTCAGGGGGG AGCAATGTCGAATCCCGCTGCGATACGCAACATCCTCAATGTCGCGCATGAAAACGTCGCGATCGATTCCGGACTGAACA TTGTTGATTTCGCTGCGCGTGCCTCGGAATTGACCAAGCGGCCGACATCTTTCTACACGTTGCCCATCTCCGACTTCGGT GCCGATTCCAACGGCTCGGACGTCAATATCGTCGATCTGCCGACGATCCGGCAGATTGTCCACGACCGTTTCTCCTCAGA TCCCGTACCCGAGGCACCGAGCGCCGCCGCGGCGTCCGCGCCGCCAGCGCTGTCCACGCCCGTGGTGCTCAATGTCGTCA ACGCGACATCGCGCGACGGGTTGGCTGCCGCAGTCGAGGATGCTTTTACCGCCAGAGGATTCACGCGTGGTCGGGCATCG ACAGCGGAGACCCAGTCCACCGAGAGTTCCATCATGTACGGCGAGGACGCGCAAGAGGGTGCGCAGGCGCTTGCCGATCA GCTGCACCTGCCCATGACGGAATCCGGCGCGGTTGCACCCGGAACCGTGCAGCTGACCGTGGGATCGCAGTTCCCCGTGG ACAACTACATCGCGCATCACAGCGGTGGTGCCAAGGGCGGCTCGTCAGGGGAAGCCGACCCCGCCGACAAGATGACCGCG GTCGCGGCGACGGGGACCGGCGTGCAAGCGCCGGCACCCACCGATCTGAGTCAGCTCACCGCGAACGGCATTCCCTGCGT CAAGTGA
Upstream 100 bases:
>100_bases GCTTGTCGGGTTTTTGTCGACTGGTACAGAACAATGGTCAATTGTTATGAGCAGACCGGATTCTGGCCAGTCACAGCGCT GGGTGCTGTCGAAGGGCCGC
Downstream 100 bases:
>100_bases CTTGTGTGCCGATCATGCATCCCCGAGGAATCGGACATGCAGGGCGCGCACATCTTCCGCGAGATCTGGTGCGGGACCGT CGGTCTGGACACCGGGAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Cell Envelope-Related Transcriptional Attenuator; LytR Family Transcriptional Regulator; Secreted Protein; LytR Family Regulatory Protein; Transcriptional Regulator-Like Protein; Lytr Family Transcriptional Regulator; Cell Envelope-Like Function Transcriptional Attenuator; Cell Envelope-Related Function Transcriptional Attenuator; Transcriptional Regulator LytR Family Protein; Transcriptional Regulatory Protein; Membrane-Bound Transcriptional Regulator; Transcriptional Regulator LytR Family
Number of amino acids: Translated: 508; Mature: 508
Protein sequence:
>508_residues MVVGAVAAFVMAITGFGWAGYNTAVGQIITSHVLPGVLTPVGQDQNILLMGLDSRLDQNGQPLPQDMYDALHAGDETSGG YNANVLIVVHIPGNGGPISAVSIPRDDYVNLVGCPGSVCKGKVKQAYGFAYQQALDAQANGSADAAGAKDLTAREQAARE AGRKAQIDTVSEFLGVQIDHFVEVTLAAFFQIAKTVQPIAVCLNHDTIDEFSGANFHEGVQQIDASQAMAFVRQRRDEND GSFTDMDRTRRQQAFLVSLLAAVRQGGAMSNPAAIRNILNVAHENVAIDSGLNIVDFAARASELTKRPTSFYTLPISDFG ADSNGSDVNIVDLPTIRQIVHDRFSSDPVPEAPSAAAASAPPALSTPVVLNVVNATSRDGLAAAVEDAFTARGFTRGRAS TAETQSTESSIMYGEDAQEGAQALADQLHLPMTESGAVAPGTVQLTVGSQFPVDNYIAHHSGGAKGGSSGEADPADKMTA VAATGTGVQAPAPTDLSQLTANGIPCVK
Sequences:
>Translated_508_residues MVVGAVAAFVMAITGFGWAGYNTAVGQIITSHVLPGVLTPVGQDQNILLMGLDSRLDQNGQPLPQDMYDALHAGDETSGG YNANVLIVVHIPGNGGPISAVSIPRDDYVNLVGCPGSVCKGKVKQAYGFAYQQALDAQANGSADAAGAKDLTAREQAARE AGRKAQIDTVSEFLGVQIDHFVEVTLAAFFQIAKTVQPIAVCLNHDTIDEFSGANFHEGVQQIDASQAMAFVRQRRDEND GSFTDMDRTRRQQAFLVSLLAAVRQGGAMSNPAAIRNILNVAHENVAIDSGLNIVDFAARASELTKRPTSFYTLPISDFG ADSNGSDVNIVDLPTIRQIVHDRFSSDPVPEAPSAAAASAPPALSTPVVLNVVNATSRDGLAAAVEDAFTARGFTRGRAS TAETQSTESSIMYGEDAQEGAQALADQLHLPMTESGAVAPGTVQLTVGSQFPVDNYIAHHSGGAKGGSSGEADPADKMTA VAATGTGVQAPAPTDLSQLTANGIPCVK >Mature_508_residues MVVGAVAAFVMAITGFGWAGYNTAVGQIITSHVLPGVLTPVGQDQNILLMGLDSRLDQNGQPLPQDMYDALHAGDETSGG YNANVLIVVHIPGNGGPISAVSIPRDDYVNLVGCPGSVCKGKVKQAYGFAYQQALDAQANGSADAAGAKDLTAREQAARE AGRKAQIDTVSEFLGVQIDHFVEVTLAAFFQIAKTVQPIAVCLNHDTIDEFSGANFHEGVQQIDASQAMAFVRQRRDEND GSFTDMDRTRRQQAFLVSLLAAVRQGGAMSNPAAIRNILNVAHENVAIDSGLNIVDFAARASELTKRPTSFYTLPISDFG ADSNGSDVNIVDLPTIRQIVHDRFSSDPVPEAPSAAAASAPPALSTPVVLNVVNATSRDGLAAAVEDAFTARGFTRGRAS TAETQSTESSIMYGEDAQEGAQALADQLHLPMTESGAVAPGTVQLTVGSQFPVDNYIAHHSGGAKGGSSGEADPADKMTA VAATGTGVQAPAPTDLSQLTANGIPCVK
Specific function: Unknown
COG id: COG1316
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52844; Mature: 52844
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVGAVAAFVMAITGFGWAGYNTAVGQIITSHVLPGVLTPVGQDQNILLMGLDSRLDQNG CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHCCCCC QPLPQDMYDALHAGDETSGGYNANVLIVVHIPGNGGPISAVSIPRDDYVNLVGCPGSVCK CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCEEECCCCHHHH GKVKQAYGFAYQQALDAQANGSADAAGAKDLTAREQAAREAGRKAQIDTVSEFLGVQIDH HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHH FVEVTLAAFFQIAKTVQPIAVCLNHDTIDEFSGANFHEGVQQIDASQAMAFVRQRRDEND HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC GSFTDMDRTRRQQAFLVSLLAAVRQGGAMSNPAAIRNILNVAHENVAIDSGLNIVDFAAR CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECCCCCHHHHHHH ASELTKRPTSFYTLPISDFGADSNGSDVNIVDLPTIRQIVHDRFSSDPVPEAPSAAAASA HHHHHCCCCCEEEEECHHCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCC PPALSTPVVLNVVNATSRDGLAAAVEDAFTARGFTRGRASTAETQSTESSIMYGEDAQEG CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEECCCHHHH AQALADQLHLPMTESGAVAPGTVQLTVGSQFPVDNYIAHHSGGAKGGSSGEADPADKMTA HHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCHHHEEE VAATGTGVQAPAPTDLSQLTANGIPCVK EEECCCCCCCCCCCCHHHHHCCCCCCCC >Mature Secondary Structure MVVGAVAAFVMAITGFGWAGYNTAVGQIITSHVLPGVLTPVGQDQNILLMGLDSRLDQNG CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHCCCCC QPLPQDMYDALHAGDETSGGYNANVLIVVHIPGNGGPISAVSIPRDDYVNLVGCPGSVCK CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCEEECCCCHHHH GKVKQAYGFAYQQALDAQANGSADAAGAKDLTAREQAAREAGRKAQIDTVSEFLGVQIDH HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHH FVEVTLAAFFQIAKTVQPIAVCLNHDTIDEFSGANFHEGVQQIDASQAMAFVRQRRDEND HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC GSFTDMDRTRRQQAFLVSLLAAVRQGGAMSNPAAIRNILNVAHENVAIDSGLNIVDFAAR CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECCCCCHHHHHHH ASELTKRPTSFYTLPISDFGADSNGSDVNIVDLPTIRQIVHDRFSSDPVPEAPSAAAASA HHHHHCCCCCEEEEECHHCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCC PPALSTPVVLNVVNATSRDGLAAAVEDAFTARGFTRGRASTAETQSTESSIMYGEDAQEG CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEECCCHHHH AQALADQLHLPMTESGAVAPGTVQLTVGSQFPVDNYIAHHSGGAKGGSSGEADPADKMTA HHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCHHHEEE VAATGTGVQAPAPTDLSQLTANGIPCVK EEECCCCCCCCCCCCHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA