Click here to switch to the map view.

The map label for this gene is nrdF [H]

Identifier: 169630485

GI number: 169630485

Start: 3451803

End: 3452777

Strand: Reverse

Name: nrdF [H]

Synonym: MAB_3404c

Alternate gene names: 169630485

Gene position: 3452777-3451803 (Counterclockwise)

Preceding gene: 169630489

Following gene: 169630484

Centisome position: 68.14

GC content: 58.56

Gene sequence:

>975_bases
GTGAGTGAAAAACTGAAGCTGGTCAGCCGCGTCTCGGCGATCAACTGGAATCGGGTTCCCGATGAAAAGGATGCCGAAGT
CTGGGACCGGCTTACCGGTAACTTTTGGCTGCCCGAGAAGGTGCCGGTGTCCAATGACATTCAGTCCTGGAACACGCTGA
CCGACCATGAAAAGCAGTTGACCATGCGGGTTTTCACGGGCCTGACGCTGCTGGACACCATTCAGGGCACCGTTGGTGCG
GTCAGTCTGATCCCCGACGCGATCACTCCGCACGAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGTCGGTGCACGC
CAAGAGCTACAGCTCGATTTTCTCGACGCTGTGCTCCACGCGTGAGATCGATGACGCGTTCCGCTGGTCGGAGGAGAACC
CGAACCTGCAACGCAAGGCCGAGATCGTCATGGAGTACTACCGGGGTGACGAGCCGCTCAAGCGCAAGGTTGCCTCGACC
TTGCTGGAGAGCTTCCTGTTCTACTCCGGCTTCTACCTTCCGATGTATTGGTCCAGCCGCGCCAAACTCACCAACACCGC
CGACATGATCCGGCTCATCATCCGCGATGAGGCCGTGCACGGGTACTACATCGGTTACAAGTTCCAGCGTGGTCTGGAGC
GCGTCGATGAGGCCAAGCGTGCCGAGATCAAGGAGTACACGTACGACCTGCTCTACGAGCTGTACGAGAACGAAACCGAT
TACACCGAAGATCTTTACGACGAGGTTGGGCTTACCGAGGACGTCAAGAAGTTCCTGCGCTACAACGCCAACAAGGCCCT
GATGAACCTGGGCTATGAGGCGCTTTTCCCGCGCGAGGAGACCGACGTCAACCCGGCGATCCTGTCCGCTCTATCGCCGA
ACGCCGACGAGAACCACGACTTCTTCTCCGGCTCGGGTTCGTCGTACGTCATCGGCAAGGCCGTGAACACCGAAGACGAG
GATTGGGACTTCTAG

Upstream 100 bases:

>100_bases
ACACGTTGTGTTGCGCCGGGATGTCGCCCCCTAGGGGTAGTGTCTGTTCCACAGTCAGCGAATCCCGCGAACTTGTTCAA
CGTTCTCCAGGAGTGGTCTC

Downstream 100 bases:

>100_bases
CCCGGTTCTCGCCACAAGACGCAAAGCCCCCACGCGCCCGGCGCGTCGGGGGCTTTTGCGGCTGTTCGTCCGGGACAAAT
GAACGGCCGGTGAACTGTGC

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSEKLKLVSRVSAINWNRVPDEKDAEVWDRLTGNFWLPEKVPVSNDIQSWNTLTDHEKQLTMRVFTGLTLLDTIQGTVGA
VSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFRWSEENPNLQRKAEIVMEYYRGDEPLKRKVAST
LLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERVDEAKRAEIKEYTYDLLYELYENETD
YTEDLYDEVGLTEDVKKFLRYNANKALMNLGYEALFPREETDVNPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDE
DWDF

Sequences:

>Translated_324_residues
MSEKLKLVSRVSAINWNRVPDEKDAEVWDRLTGNFWLPEKVPVSNDIQSWNTLTDHEKQLTMRVFTGLTLLDTIQGTVGA
VSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFRWSEENPNLQRKAEIVMEYYRGDEPLKRKVAST
LLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERVDEAKRAEIKEYTYDLLYELYENETD
YTEDLYDEVGLTEDVKKFLRYNANKALMNLGYEALFPREETDVNPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDE
DWDF
>Mature_323_residues
SEKLKLVSRVSAINWNRVPDEKDAEVWDRLTGNFWLPEKVPVSNDIQSWNTLTDHEKQLTMRVFTGLTLLDTIQGTVGAV
SLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFRWSEENPNLQRKAEIVMEYYRGDEPLKRKVASTL
LESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERVDEAKRAEIKEYTYDLLYELYENETDY
TEDLYDEVGLTEDVKKFLRYNANKALMNLGYEALFPREETDVNPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDED
WDF

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1789031, Length=317, Percent_Identity=71.608832807571, Blast_Score=496, Evalue=1e-142,
Organism=Escherichia coli, GI1788567, Length=314, Percent_Identity=27.7070063694268, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 37443; Mature: 37312

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS00368 RIBORED_SMALL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKLKLVSRVSAINWNRVPDEKDAEVWDRLTGNFWLPEKVPVSNDIQSWNTLTDHEKQL
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCHHHHHH
TMRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCST
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REIDDAFRWSEENPNLQRKAEIVMEYYRGDEPLKRKVASTLLESFLFYSGFYLPMYWSSR
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
AKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERVDEAKRAEIKEYTYDLLYELYENETD
CCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
YTEDLYDEVGLTEDVKKFLRYNANKALMNLGYEALFPREETDVNPAILSALSPNADENHD
HHHHHHHHCCCHHHHHHHHHHCCCHHHHHCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCC
FFSGSGSSYVIGKAVNTEDEDWDF
CCCCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
SEKLKLVSRVSAINWNRVPDEKDAEVWDRLTGNFWLPEKVPVSNDIQSWNTLTDHEKQL
CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCHHHHHH
TMRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCST
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REIDDAFRWSEENPNLQRKAEIVMEYYRGDEPLKRKVASTLLESFLFYSGFYLPMYWSSR
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
AKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERVDEAKRAEIKEYTYDLLYELYENETD
CCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
YTEDLYDEVGLTEDVKKFLRYNANKALMNLGYEALFPREETDVNPAILSALSPNADENHD
HHHHHHHHCCCHHHHHHHHHHCCCHHHHHCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCC
FFSGSGSSYVIGKAVNTEDEDWDF
CCCCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]