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The map label for this gene is ybjK [C]

Identifier: 169630478

GI number: 169630478

Start: 3445136

End: 3445726

Strand: Direct

Name: ybjK [C]

Synonym: MAB_3397

Alternate gene names: 169630478

Gene position: 3445136-3445726 (Clockwise)

Preceding gene: 169630477

Following gene: 169630479

Centisome position: 67.99

GC content: 68.02

Gene sequence:

>591_bases
ATGACTAACTTGGCCGATCGGCCAAATTCCGCACGGGGCGATCGTCGGCGCACGCAGCTGGTGCGTGCCGGCGTGGAACT
ACTGTCCGAGGGAGGCTGGCCCGCGGTGACCACCCGTGCGGTCGCCGCCCGCGCAGGCACCAATCCCGGCCTGATCCACT
ACCACTTCGGCGGCCTGCCGGGCCTGCACTGCGCGGTCGCCCGCGAAACCTGCGAGTTGGTGATCAGCCCGCTGGTCGCG
ACGTTTCTCGACGCACCCGATACCCGCGCCGCTCTGCACGCGATGCGGGACGCGCTGCCCCAGGCCGCGAGTGACGACAA
CGCGATGCACCTGGCCGTCGAGCTCATCGCCGGAGCGACCCGCGATGCCGACTTGGGCGCCGCACTGGGCACCAAACTCA
AAGAGGTACGTGCCGAGATCGCCGACCACGTGCGACTGCGCCACCCGGATTGGCCCCGGCGACGAGCGGCCGGGATGGCA
ACACTGATCGTCGCGTTCATGGACGGCCTGGTGCTACACCACACCGTCGACCCCAATATCGAGACGGCCGAAGCGTTTTC
ACTGCTGGAAAGTCTGCTGGACGAGGAGTAG

Upstream 100 bases:

>100_bases
TGCACCAGATTCCTAGCACCCCCGAGCTACTCGGCATCCTCGCGATCGTGGTGGCTGTCGCCGCACGCCGAGACGCCCCA
CCGGGTGGTAACTTGGCCAT

Downstream 100 bases:

>100_bases
TTCGTGAAAAAGATCCAAAAACCCAAACCCCCAACTGGATTCCAGCGCCTGCTGTGGCGACTGCCTATCACGCTGTTTCG
GGCCCATCTCGGCTTTCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTNLADRPNSARGDRRRTQLVRAGVELLSEGGWPAVTTRAVAARAGTNPGLIHYHFGGLPGLHCAVARETCELVISPLVA
TFLDAPDTRAALHAMRDALPQAASDDNAMHLAVELIAGATRDADLGAALGTKLKEVRAEIADHVRLRHPDWPRRRAAGMA
TLIVAFMDGLVLHHTVDPNIETAEAFSLLESLLDEE

Sequences:

>Translated_196_residues
MTNLADRPNSARGDRRRTQLVRAGVELLSEGGWPAVTTRAVAARAGTNPGLIHYHFGGLPGLHCAVARETCELVISPLVA
TFLDAPDTRAALHAMRDALPQAASDDNAMHLAVELIAGATRDADLGAALGTKLKEVRAEIADHVRLRHPDWPRRRAAGMA
TLIVAFMDGLVLHHTVDPNIETAEAFSLLESLLDEE
>Mature_195_residues
TNLADRPNSARGDRRRTQLVRAGVELLSEGGWPAVTTRAVAARAGTNPGLIHYHFGGLPGLHCAVARETCELVISPLVAT
FLDAPDTRAALHAMRDALPQAASDDNAMHLAVELIAGATRDADLGAALGTKLKEVRAEIADHVRLRHPDWPRRRAAGMAT
LIVAFMDGLVLHHTVDPNIETAEAFSLLESLLDEE

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21043; Mature: 20912

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLADRPNSARGDRRRTQLVRAGVELLSEGGWPAVTTRAVAARAGTNPGLIHYHFGGLP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEECCCCC
GLHCAVARETCELVISPLVATFLDAPDTRAALHAMRDALPQAASDDNAMHLAVELIAGAT
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
RDADLGAALGTKLKEVRAEIADHVRLRHPDWPRRRAAGMATLIVAFMDGLVLHHTVDPNI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCC
ETAEAFSLLESLLDEE
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TNLADRPNSARGDRRRTQLVRAGVELLSEGGWPAVTTRAVAARAGTNPGLIHYHFGGLP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEECCCCC
GLHCAVARETCELVISPLVATFLDAPDTRAALHAMRDALPQAASDDNAMHLAVELIAGAT
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
RDADLGAALGTKLKEVRAEIADHVRLRHPDWPRRRAAGMATLIVAFMDGLVLHHTVDPNI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCC
ETAEAFSLLESLLDEE
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA