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The map label for this gene is yifB [C]

Identifier: 169630294

GI number: 169630294

Start: 3254121

End: 3255620

Strand: Reverse

Name: yifB [C]

Synonym: MAB_3213c

Alternate gene names: 169630294

Gene position: 3255620-3254121 (Counterclockwise)

Preceding gene: 169630295

Following gene: 169630293

Centisome position: 64.25

GC content: 65.87

Gene sequence:

>1500_bases
ATGGCGCTGGGCAGAGCGTATTCCGTCGCGGTCAAGGCGGTTACCGGCCAGACTGTCGAGATCGAGGCGGACATAAGTGC
CGGACTACCAGGAGTGCACCTGGTTGGACTGCCTGATGCCGCGTTACAGGAATCCCGCGACCGGGTGCGCGCGGCGATCA
CCAATTGCGGGTTCACGTGGCCGGCGTCCCGACTCACCTTGGCTCTATCGCCGGCGACGCTGCCGAAGATGGGGTCGGTG
TACGACCTCGCGCTTGCCACCGCTGTGCTGTCGGCCAACAAGGCGATTCCACCAGACCGGCTGGAAAAGACCTTGTTGCT
TGGTGAATTGGCGCTTGACGGGCGAGTGCGTCCGGTTCGTGGTGTGTTACCGGCAGTACTGGCGGCAAAGCGTGACGGAT
GGCCGACGGTCGTGGTGCCGCAGGCCAACCTGGGAGAGGCGGGGCTGGTCGAAGGTATTGAGGTACTGGGAGTCCGGACA
TTGCGCCAGCTGACGGCGTGGCTGTGTGCTGACGGTGAGCTGGATCCCGTGTCACAGTCGGAATACCGGCACGTGACCGA
GGCTCCGGACATGGCGGATGTAGTGGGCCACGCGGATGCCCGCTTCGCCGTCGAGTTGGCTGCGGCCGGCGCACACCATC
TGATGTTGACAGGGCCTCCCGGAATTGGGAAAACAATGCTGGCGCAGCGTTTACCGGGCCTGCTGCCGCCGCTGCGCCAC
GAAGAGGCGCTCGAGGTGACAGCCGTGCATTCCGTGGCGGGTCTCTTGACGGCTCGGCGGCCGTTGATCACCGAACCGCC
GTTCGTGGCGCCGCACCACACGTCCAGTGTCGCCGCGCTCGTCGGCGGTGGCTCAGGCACGGCAAAGCCCGGTGCGGTCA
GCATGGCCCATCGGGGGGTGCTGTTCCTCGATGAGTGTGCCGAACTGTCGACCCCGGCGCTGGAGGCGTTGCGGACCCCC
TTGGAGGATGGGGAAATTCGACTTGCGCGGCGTGACGGCGTGGTCACTTACCCGGCTCGATTTCAACTGGTACTCGCGGC
GAACCCGTGTCCGTGCGCTCCGGCGAATCCGCGGGATTGCACGTGTCCGGCGCAGCTGCGTCGCCGGTACCTCGGCAAGT
TGTCGGGGCCGCTTCTCGATCGGGTCGACCTTCGGGTCAAAATGCACCAGGTCAGCCAAACGGCGCTCAATGACGCGGCC
GAGGGCACAGCGGTTGTCCGTGAGCGCGTACTGCTGGCCCGTGAACGGGCTTCGCGACGATGGGCCGACTACGGATTTCG
GGTCAACGCCGACGCCCCGGGGCCGTTGTTACGCAGGGAGTTCCGGCCATCACGAGCCGTTATGGAACCGCTGCGCAATG
CGATGGAACGCGGTTTGATCAGCGTGCGGGCGCTCGATCGATGCCTACGTGTGGCGTGGACATTGGCCGACCTCGGCGGC
CGGGATCTGCCGGCCGCCGAGGATGTCAAGCTCGCACTGACCTTCCGGGACAAGCGATGA

Upstream 100 bases:

>100_bases
GCACAGGGGGGTTCGTGGTCGTCGGTGCGCATCGACGTCATCGAGGTAAGGCTGGCCGGAGCCACACCGGAGCTCACCCA
CATCCACGGGGTGGGATGAG

Downstream 100 bases:

>100_bases
GCAGCGCCACGGCCGACTGGGCATACCTGTCACGTGTGAGTGAGGCGCCCAGCGCCGAACTGGCGGCCATGGTGTCGGTG
TTCGGTGTGCGGGAGACCGC

Product: putative magnesium chelatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MALGRAYSVAVKAVTGQTVEIEADISAGLPGVHLVGLPDAALQESRDRVRAAITNCGFTWPASRLTLALSPATLPKMGSV
YDLALATAVLSANKAIPPDRLEKTLLLGELALDGRVRPVRGVLPAVLAAKRDGWPTVVVPQANLGEAGLVEGIEVLGVRT
LRQLTAWLCADGELDPVSQSEYRHVTEAPDMADVVGHADARFAVELAAAGAHHLMLTGPPGIGKTMLAQRLPGLLPPLRH
EEALEVTAVHSVAGLLTARRPLITEPPFVAPHHTSSVAALVGGGSGTAKPGAVSMAHRGVLFLDECAELSTPALEALRTP
LEDGEIRLARRDGVVTYPARFQLVLAANPCPCAPANPRDCTCPAQLRRRYLGKLSGPLLDRVDLRVKMHQVSQTALNDAA
EGTAVVRERVLLARERASRRWADYGFRVNADAPGPLLRREFRPSRAVMEPLRNAMERGLISVRALDRCLRVAWTLADLGG
RDLPAAEDVKLALTFRDKR

Sequences:

>Translated_499_residues
MALGRAYSVAVKAVTGQTVEIEADISAGLPGVHLVGLPDAALQESRDRVRAAITNCGFTWPASRLTLALSPATLPKMGSV
YDLALATAVLSANKAIPPDRLEKTLLLGELALDGRVRPVRGVLPAVLAAKRDGWPTVVVPQANLGEAGLVEGIEVLGVRT
LRQLTAWLCADGELDPVSQSEYRHVTEAPDMADVVGHADARFAVELAAAGAHHLMLTGPPGIGKTMLAQRLPGLLPPLRH
EEALEVTAVHSVAGLLTARRPLITEPPFVAPHHTSSVAALVGGGSGTAKPGAVSMAHRGVLFLDECAELSTPALEALRTP
LEDGEIRLARRDGVVTYPARFQLVLAANPCPCAPANPRDCTCPAQLRRRYLGKLSGPLLDRVDLRVKMHQVSQTALNDAA
EGTAVVRERVLLARERASRRWADYGFRVNADAPGPLLRREFRPSRAVMEPLRNAMERGLISVRALDRCLRVAWTLADLGG
RDLPAAEDVKLALTFRDKR
>Mature_498_residues
ALGRAYSVAVKAVTGQTVEIEADISAGLPGVHLVGLPDAALQESRDRVRAAITNCGFTWPASRLTLALSPATLPKMGSVY
DLALATAVLSANKAIPPDRLEKTLLLGELALDGRVRPVRGVLPAVLAAKRDGWPTVVVPQANLGEAGLVEGIEVLGVRTL
RQLTAWLCADGELDPVSQSEYRHVTEAPDMADVVGHADARFAVELAAAGAHHLMLTGPPGIGKTMLAQRLPGLLPPLRHE
EALEVTAVHSVAGLLTARRPLITEPPFVAPHHTSSVAALVGGGSGTAKPGAVSMAHRGVLFLDECAELSTPALEALRTPL
EDGEIRLARRDGVVTYPARFQLVLAANPCPCAPANPRDCTCPAQLRRRYLGKLSGPLLDRVDLRVKMHQVSQTALNDAAE
GTAVVRERVLLARERASRRWADYGFRVNADAPGPLLRREFRPSRAVMEPLRNAMERGLISVRALDRCLRVAWTLADLGGR
DLPAAEDVKLALTFRDKR

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=501, Percent_Identity=37.9241516966068, Blast_Score=320, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 53350; Mature: 53219

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGRAYSVAVKAVTGQTVEIEADISAGLPGVHLVGLPDAALQESRDRVRAAITNCGFTW
CCCCCEEEEEEEEECCCEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCC
PASRLTLALSPATLPKMGSVYDLALATAVLSANKAIPPDRLEKTLLLGELALDGRVRPVR
CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
GVLPAVLAAKRDGWPTVVVPQANLGEAGLVEGIEVLGVRTLRQLTAWLCADGELDPVSQS
HHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EYRHVTEAPDMADVVGHADARFAVELAAAGAHHLMLTGPPGIGKTMLAQRLPGLLPPLRH
HHHHHCCCCCHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCC
EEALEVTAVHSVAGLLTARRPLITEPPFVAPHHTSSVAALVGGGSGTAKPGAVSMAHRGV
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHCCE
LFLDECAELSTPALEALRTPLEDGEIRLARRDGVVTYPARFQLVLAANPCPCAPANPRDC
EEEHHHHHCCCHHHHHHHCCCCCCCEEEEECCCEEEECCEEEEEEECCCCCCCCCCCCCC
TCPAQLRRRYLGKLSGPLLDRVDLRVKMHQVSQTALNDAAEGTAVVRERVLLARERASRR
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
WADYGFRVNADAPGPLLRREFRPSRAVMEPLRNAMERGLISVRALDRCLRVAWTLADLGG
HHHCCEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
RDLPAAEDVKLALTFRDKR
CCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
ALGRAYSVAVKAVTGQTVEIEADISAGLPGVHLVGLPDAALQESRDRVRAAITNCGFTW
CCCCEEEEEEEEECCCEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCC
PASRLTLALSPATLPKMGSVYDLALATAVLSANKAIPPDRLEKTLLLGELALDGRVRPVR
CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
GVLPAVLAAKRDGWPTVVVPQANLGEAGLVEGIEVLGVRTLRQLTAWLCADGELDPVSQS
HHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EYRHVTEAPDMADVVGHADARFAVELAAAGAHHLMLTGPPGIGKTMLAQRLPGLLPPLRH
HHHHHCCCCCHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCC
EEALEVTAVHSVAGLLTARRPLITEPPFVAPHHTSSVAALVGGGSGTAKPGAVSMAHRGV
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHCCE
LFLDECAELSTPALEALRTPLEDGEIRLARRDGVVTYPARFQLVLAANPCPCAPANPRDC
EEEHHHHHCCCHHHHHHHCCCCCCCEEEEECCCEEEECCEEEEEEECCCCCCCCCCCCCC
TCPAQLRRRYLGKLSGPLLDRVDLRVKMHQVSQTALNDAAEGTAVVRERVLLARERASRR
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
WADYGFRVNADAPGPLLRREFRPSRAVMEPLRNAMERGLISVRALDRCLRVAWTLADLGG
HHHCCEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
RDLPAAEDVKLALTFRDKR
CCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]