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The map label for this gene is rbfA

Identifier: 169630212

GI number: 169630212

Start: 3169333

End: 3169809

Strand: Reverse

Name: rbfA

Synonym: MAB_3130c

Alternate gene names: 169630212

Gene position: 3169809-3169333 (Counterclockwise)

Preceding gene: 169630213

Following gene: 169630211

Centisome position: 62.56

GC content: 65.2

Gene sequence:

>477_bases
GTGGCAGATCCCGCCCGCGCACGCCGGCTGGCGAAGCGGATCGGGGCCATCGTCGCCTCGGCGATCGAGTACGAGATCAA
GGATCCGAGGCTGACGATGGTCACGGTCACCGATACTCGGGTGACCAACGATCTTCACGATGCGACCGTGTACTACACCG
TGATGGGGCAGACTCTTTCCGACGAGCCGGATTTCGCCGGCGCGGCGGCTGCGCTAGATAAGGCAAAGGGTGTGCTTCGA
ACCAAGGTGGGTGCCGGTACAGGAGTGAGGTTCACGCCCACCCTGACCTTTGTGCTCGACACGATGGCCGATTCGGCCCG
GCACATGGAGGAGCTGCTGGACCGCACGCGCGCGGCCGATGCGGCTCTTGCCGAGGTGCGTCAGGGAGCGGTACACGCCG
GCGATGCCGATCCGTACAAGGAATCTGCGGCCGAGGAACCCGCAGCCTACGAGGACGATGAGCGCCGTCCCGATTGA

Upstream 100 bases:

>100_bases
CGCGACGGCTACGAGTGCGGTCTGACCTTGACGTACAACGACATCAAGGAAGGCGACGTCATCGAGGCGTACGAGCTGCG
CGAGAAGGAGCGGGTCTAAC

Downstream 100 bases:

>100_bases
GACGGGTGCCGTGGGGGCACGCGTAGACGAGGACGGTGCCGTGGCCCTGCTGGCGAAGGCCAGCAGGGTGGTGATCATCT
GTCATGTGCATCCCGACGCC

Product: ribosome-binding factor A (RbfA)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MADPARARRLAKRIGAIVASAIEYEIKDPRLTMVTVTDTRVTNDLHDATVYYTVMGQTLSDEPDFAGAAAALDKAKGVLR
TKVGAGTGVRFTPTLTFVLDTMADSARHMEELLDRTRAADAALAEVRQGAVHAGDADPYKESAAEEPAAYEDDERRPD

Sequences:

>Translated_158_residues
MADPARARRLAKRIGAIVASAIEYEIKDPRLTMVTVTDTRVTNDLHDATVYYTVMGQTLSDEPDFAGAAAALDKAKGVLR
TKVGAGTGVRFTPTLTFVLDTMADSARHMEELLDRTRAADAALAEVRQGAVHAGDADPYKESAAEEPAAYEDDERRPD
>Mature_157_residues
ADPARARRLAKRIGAIVASAIEYEIKDPRLTMVTVTDTRVTNDLHDATVYYTVMGQTLSDEPDFAGAAAALDKAKGVLRT
KVGAGTGVRFTPTLTFVLDTMADSARHMEELLDRTRAADAALAEVRQGAVHAGDADPYKESAAEEPAAYEDDERRPD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_MYCA9 (B1MD86)

Other databases:

- EMBL:   CU458896
- RefSeq:   YP_001703861.1
- ProteinModelPortal:   B1MD86
- SMR:   B1MD86
- EnsemblBacteria:   EBMYCT00000006297
- GeneID:   5965635
- GenomeReviews:   CU458896_GR
- KEGG:   mab:MAB_3130c
- GeneTree:   EBGT00050000017622
- HOGENOM:   HBG751055
- OMA:   TGDLHDA
- BioCyc:   MABS561007:MAB_3130C-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 17052; Mature: 16921

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADPARARRLAKRIGAIVASAIEYEIKDPRLTMVTVTDTRVTNDLHDATVYYTVMGQTLS
CCCHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCHHCCCHHHHEEEEEEECCCCC
DEPDFAGAAAALDKAKGVLRTKVGAGTGVRFTPTLTFVLDTMADSARHMEELLDRTRAAD
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALAEVRQGAVHAGDADPYKESAAEEPAAYEDDERRPD
HHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADPARARRLAKRIGAIVASAIEYEIKDPRLTMVTVTDTRVTNDLHDATVYYTVMGQTLS
CCHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCHHCCCHHHHEEEEEEECCCCC
DEPDFAGAAAALDKAKGVLRTKVGAGTGVRFTPTLTFVLDTMADSARHMEELLDRTRAAD
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALAEVRQGAVHAGDADPYKESAAEEPAAYEDDERRPD
HHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA