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The map label for this gene is dapB [H]

Identifier: 169630178

GI number: 169630178

Start: 3138568

End: 3139305

Strand: Reverse

Name: dapB [H]

Synonym: MAB_3096c

Alternate gene names: 169630178

Gene position: 3139305-3138568 (Counterclockwise)

Preceding gene: 169630181

Following gene: 169630177

Centisome position: 61.95

GC content: 65.58

Gene sequence:

>738_bases
GTGACTAACATCGCGACCGGAGTGCTGGGAGCACAGGGCAAGGTCGGCCAGGCCATGTGTCAGGCGGTCGATTCCGCGGC
CGATCTGGACCTGGTGGCCGCCGTCGATAAGAACGACTCACTGGAGGCGCTCACCGCGGCCAGCGTGGTCATCGACTTCA
CCCATCCCGATGTCGTCATGGACAACCTGAAGTTCTTGATCGGTAAGGGCATCCATGCCGTCGTTGGCACCACCGGCTTC
ACCGACGAGCGATTGGACCAGGTGCGCTCCTGGCTGGCGGACAGCCCCGGAACGGGTGTGCTGATTGCCCCCAACTTCGC
GATCGGCGCGGTGTTGTCCATGAAGTTCGCTCAGCAGGCGGCCCGATTCTTTGAATCGGTAGAGATTATCGAGTTGCATC
ACCCGAACAAGGCGGACGCACCCTCCGGAACGGCCACGCGCACAGCGCGACTCATCGCCGAGGCCCGCCGGGGATTGCCA
CCCAGCCCGGATGCCACCAGCACCGGGCTCGAGGGAGCGCGCGGCGCCGACGTCGACGGGGTGCGGGTGCATGCGGTACG
CGTCTCCGGACTCGTCGCGCACCAAGAGGTGCTGTTCGGGACAACCGGTGAGACGTTGACCATCCGGCACGACAGCATCG
ATCGGAGCTCCTTTGCGCCGGGGGTGCTGCTGGCCGTGCGTGATATCGCGAAGCGACCCGGCCTCACGATCGGCATCGAG
CCCCTGCTGGAGCTGTAG

Upstream 100 bases:

>100_bases
AACGACGCGATTCCCGGGCATGTCGGCCGTGTCGCGGAGCGCCGGGCGTTGGGCGGACGTCCTCTCGGCCATCGCGGTGC
GGAGGATTAGGGTGACCGGC

Downstream 100 bases:

>100_bases
TGTCCGCCGCGGCCAGGGTCAAGATCCTCATCGCCTTCATGTGTGTGGCGATGGTGGTGTACTTCCTGATCCTGGGAAAG
ATGGGTATCGCCCTCGTGCA

Product: dihydrodipicolinate reductase DapB

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTNIATGVLGAQGKVGQAMCQAVDSAADLDLVAAVDKNDSLEALTAASVVIDFTHPDVVMDNLKFLIGKGIHAVVGTTGF
TDERLDQVRSWLADSPGTGVLIAPNFAIGAVLSMKFAQQAARFFESVEIIELHHPNKADAPSGTATRTARLIAEARRGLP
PSPDATSTGLEGARGADVDGVRVHAVRVSGLVAHQEVLFGTTGETLTIRHDSIDRSSFAPGVLLAVRDIAKRPGLTIGIE
PLLEL

Sequences:

>Translated_245_residues
MTNIATGVLGAQGKVGQAMCQAVDSAADLDLVAAVDKNDSLEALTAASVVIDFTHPDVVMDNLKFLIGKGIHAVVGTTGF
TDERLDQVRSWLADSPGTGVLIAPNFAIGAVLSMKFAQQAARFFESVEIIELHHPNKADAPSGTATRTARLIAEARRGLP
PSPDATSTGLEGARGADVDGVRVHAVRVSGLVAHQEVLFGTTGETLTIRHDSIDRSSFAPGVLLAVRDIAKRPGLTIGIE
PLLEL
>Mature_244_residues
TNIATGVLGAQGKVGQAMCQAVDSAADLDLVAAVDKNDSLEALTAASVVIDFTHPDVVMDNLKFLIGKGIHAVVGTTGFT
DERLDQVRSWLADSPGTGVLIAPNFAIGAVLSMKFAQQAARFFESVEIIELHHPNKADAPSGTATRTARLIAEARRGLPP
SPDATSTGLEGARGADVDGVRVHAVRVSGLVAHQEVLFGTTGETLTIRHDSIDRSSFAPGVLLAVRDIAKRPGLTIGIEP
LLEL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=249, Percent_Identity=30.5220883534137, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 25604; Mature: 25473

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNIATGVLGAQGKVGQAMCQAVDSAADLDLVAAVDKNDSLEALTAASVVIDFTHPDVVM
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHEEEEEEEECCCCHHHH
DNLKFLIGKGIHAVVGTTGFTDERLDQVRSWLADSPGTGVLIAPNFAIGAVLSMKFAQQA
HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHH
ARFFESVEIIELHHPNKADAPSGTATRTARLIAEARRGLPPSPDATSTGLEGARGADVDG
HHHHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
VRVHAVRVSGLVAHQEVLFGTTGETLTIRHDSIDRSSFAPGVLLAVRDIAKRPGLTIGIE
EEEEEEEEHHHHHHHHHEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEECHH
PLLEL
HHHCC
>Mature Secondary Structure 
TNIATGVLGAQGKVGQAMCQAVDSAADLDLVAAVDKNDSLEALTAASVVIDFTHPDVVM
CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHEEEEEEEECCCCHHHH
DNLKFLIGKGIHAVVGTTGFTDERLDQVRSWLADSPGTGVLIAPNFAIGAVLSMKFAQQA
HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHH
ARFFESVEIIELHHPNKADAPSGTATRTARLIAEARRGLPPSPDATSTGLEGARGADVDG
HHHHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
VRVHAVRVSGLVAHQEVLFGTTGETLTIRHDSIDRSSFAPGVLLAVRDIAKRPGLTIGIE
EEEEEEEEHHHHHHHHHEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEECHH
PLLEL
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA