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The map label for this gene is ygcA [C]

Identifier: 169630075

GI number: 169630075

Start: 3053495

End: 3054661

Strand: Reverse

Name: ygcA [C]

Synonym: MAB_2992c

Alternate gene names: 169630075

Gene position: 3054661-3053495 (Counterclockwise)

Preceding gene: 169630076

Following gene: 169630074

Centisome position: 60.28

GC content: 66.07

Gene sequence:

>1167_bases
ATGACCATCGGCGACATTCTGGAGGTGCACACCGGCGGCGCCGCCAACGGGGGCAGCGTGGTGGCCAGGCATGACGGGCG
CGTCATCTTCGTCAGGGACGCGCTCCCCGGCGAGCGGGTGCGCGTACAGATCACCGACGATCGTCAGGCCAGCTTCTGGC
ATGGCGCCGCCGTCGAGGTCCTGGACCCGTCGCCGCACCGCATCGAACCACTGTGTCCGATCGCCCACAGCGCCGTGGGA
TCGGGCTGCTGCGATCTGTCTTTCGCTGATCCGGTGTACGTGCGCGAGCTCAAGGGCGATGTGGTGAGTCAGCAGCTGGC
ACGACTCGGTAAGTACGAGTGGCAGGGGGTGGCGCAGCCGTTGGGGGCCGGTGACCCCACCGGGTGGCGCACTCGGGTGC
GCCTGGATGTGAATGCCTTGGGCCAGCCCGGTTTTCATCGGTATCACAGTGACGAATTAGTGACAGACCTGCGTTGTGCC
CAAGTGGTTCCGGGCCTTCTCGACGGATTGGATCAGCCCGAGCTCGGTTCCGAAGGGCCGTTGCACGCCGTCATGGACGA
TCAGGGTCGCCGACATGTGTTGCGCGGGAGCACGATTGTCGAGGGTGAGGATGTCGCGGTCCAGAAGGTGGGGGACCGGC
ACTGGTTGGTTCCCGTTACGGCGTTCTGGCAGGCCCACCGCGACGCGGCCGGCACCTACAGCCGGTTGGTCTCTGACTGG
GCGGAGCTGGAACCGGGCATGAGCGCCTGGGACTTGTACGGCGGCGTCGGCGTTTTCGCTGCCGCACTAGGGGAGGCGGT
GGGACGTACGGGACATGTTGTGAGCGTGGATACCTCGCGCCCGGCGTTCCGTAGTGCCAAGAGCGCACTAGGCGATCTGC
GCCAGGTCACCATGATCTGCGGGTCGGTGCGCCACGCCATACGCGACCTGGGTGAGGCCGATGTCGCGGTGCTGGACCCG
CCCCGGGCGGGTGCCGGACGTGAGGTCATCGGAAAGGTCGCCGCGGCGAATGTATCCAGGGTGATCCATATCGGCTGTGA
GGCAGCAGCATTCGCGCGCGATGTGGGCCTGTATCTAGAGCGTGGATATCGGGTGCGTGAGCTGCGGGTGTTCGATGCCT
TCCCGCTGACTCATCACATCGAGAGCTTCGCGCTGCTCACCCGATAG

Upstream 100 bases:

>100_bases
GGTCACATCCGTTCCCTGGCAACTCGATTCGTCTGAACGTCGGCGTGAACTGGACAGACAGTCCGCACCGGGCGACTCGC
GGCGCGGTTTCGACTCGTAA

Downstream 100 bases:

>100_bases
ACAGCGACCGGTGTAAAGATCTTATAAAGTAGCTCTCAGGTGTGCCGGGAAGTCTGGTCGGCGGTACTGAACCCTGCCTG
AAAGAACGGACACCGACTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MTIGDILEVHTGGAANGGSVVARHDGRVIFVRDALPGERVRVQITDDRQASFWHGAAVEVLDPSPHRIEPLCPIAHSAVG
SGCCDLSFADPVYVRELKGDVVSQQLARLGKYEWQGVAQPLGAGDPTGWRTRVRLDVNALGQPGFHRYHSDELVTDLRCA
QVVPGLLDGLDQPELGSEGPLHAVMDDQGRRHVLRGSTIVEGEDVAVQKVGDRHWLVPVTAFWQAHRDAAGTYSRLVSDW
AELEPGMSAWDLYGGVGVFAAALGEAVGRTGHVVSVDTSRPAFRSAKSALGDLRQVTMICGSVRHAIRDLGEADVAVLDP
PRAGAGREVIGKVAAANVSRVIHIGCEAAAFARDVGLYLERGYRVRELRVFDAFPLTHHIESFALLTR

Sequences:

>Translated_388_residues
MTIGDILEVHTGGAANGGSVVARHDGRVIFVRDALPGERVRVQITDDRQASFWHGAAVEVLDPSPHRIEPLCPIAHSAVG
SGCCDLSFADPVYVRELKGDVVSQQLARLGKYEWQGVAQPLGAGDPTGWRTRVRLDVNALGQPGFHRYHSDELVTDLRCA
QVVPGLLDGLDQPELGSEGPLHAVMDDQGRRHVLRGSTIVEGEDVAVQKVGDRHWLVPVTAFWQAHRDAAGTYSRLVSDW
AELEPGMSAWDLYGGVGVFAAALGEAVGRTGHVVSVDTSRPAFRSAKSALGDLRQVTMICGSVRHAIRDLGEADVAVLDP
PRAGAGREVIGKVAAANVSRVIHIGCEAAAFARDVGLYLERGYRVRELRVFDAFPLTHHIESFALLTR
>Mature_387_residues
TIGDILEVHTGGAANGGSVVARHDGRVIFVRDALPGERVRVQITDDRQASFWHGAAVEVLDPSPHRIEPLCPIAHSAVGS
GCCDLSFADPVYVRELKGDVVSQQLARLGKYEWQGVAQPLGAGDPTGWRTRVRLDVNALGQPGFHRYHSDELVTDLRCAQ
VVPGLLDGLDQPELGSEGPLHAVMDDQGRRHVLRGSTIVEGEDVAVQKVGDRHWLVPVTAFWQAHRDAAGTYSRLVSDWA
ELEPGMSAWDLYGGVGVFAAALGEAVGRTGHVVSVDTSRPAFRSAKSALGDLRQVTMICGSVRHAIRDLGEADVAVLDPP
RAGAGREVIGKVAAANVSRVIHIGCEAAAFARDVGLYLERGYRVRELRVFDAFPLTHHIESFALLTR

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=438, Percent_Identity=26.7123287671233, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR002792
- InterPro:   IPR010280 [H]

Pfam domain/function: PF01938 TRAM; PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 41821; Mature: 41690

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50926 TRAM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIGDILEVHTGGAANGGSVVARHDGRVIFVRDALPGERVRVQITDDRQASFWHGAAVEV
CCCCCEEEECCCCCCCCCCEEEEECCEEEEEECCCCCCEEEEEEECCCCCCEECCCEEEE
LDPSPHRIEPLCPIAHSAVGSGCCDLSFADPVYVRELKGDVVSQQLARLGKYEWQGVAQP
ECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCC
LGAGDPTGWRTRVRLDVNALGQPGFHRYHSDELVTDLRCAQVVPGLLDGLDQPELGSEGP
CCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
LHAVMDDQGRRHVLRGSTIVEGEDVAVQKVGDRHWLVPVTAFWQAHRDAAGTYSRLVSDW
EEEEECCCCCEEEECCCEEECCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
AELEPGMSAWDLYGGVGVFAAALGEAVGRTGHVVSVDTSRPAFRSAKSALGDLRQVTMIC
HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
GSVRHAIRDLGEADVAVLDPPRAGAGREVIGKVAAANVSRVIHIGCEAAAFARDVGLYLE
HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHH
RGYRVRELRVFDAFPLTHHIESFALLTR
CCCEEEEEEEEECCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TIGDILEVHTGGAANGGSVVARHDGRVIFVRDALPGERVRVQITDDRQASFWHGAAVEV
CCCCEEEECCCCCCCCCCEEEEECCEEEEEECCCCCCEEEEEEECCCCCCEECCCEEEE
LDPSPHRIEPLCPIAHSAVGSGCCDLSFADPVYVRELKGDVVSQQLARLGKYEWQGVAQP
ECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCC
LGAGDPTGWRTRVRLDVNALGQPGFHRYHSDELVTDLRCAQVVPGLLDGLDQPELGSEGP
CCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
LHAVMDDQGRRHVLRGSTIVEGEDVAVQKVGDRHWLVPVTAFWQAHRDAAGTYSRLVSDW
EEEEECCCCCEEEECCCEEECCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
AELEPGMSAWDLYGGVGVFAAALGEAVGRTGHVVSVDTSRPAFRSAKSALGDLRQVTMIC
HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
GSVRHAIRDLGEADVAVLDPPRAGAGREVIGKVAAANVSRVIHIGCEAAAFARDVGLYLE
HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHH
RGYRVRELRVFDAFPLTHHIESFALLTR
CCCEEEEEEEEECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12840036 [H]