Click here to switch to the map view.

The map label for this gene is csiR [H]

Identifier: 169630016

GI number: 169630016

Start: 2988606

End: 2989316

Strand: Reverse

Name: csiR [H]

Synonym: MAB_2933c

Alternate gene names: 169630016

Gene position: 2989316-2988606 (Counterclockwise)

Preceding gene: 169630018

Following gene: 169630015

Centisome position: 58.99

GC content: 62.73

Gene sequence:

>711_bases
ATGTCACGCACGTTCCGCTACCGGCGGCTGATCAACGAGCTGCGCGCCACCAGGTCGGGTCACGACCAGACCAGCGTGCT
CGACGGGTTGCGGCGGGCCATCCTCGACGGTGCGGCACCGCCAGGTTCGATGATCCCCATCGGTGAGGTGGCCGACACCT
ATCAAATCAGCCCCATCCCGGTACGGGAGGCGCTCAAGACCCTTGTGGCGGAAGGACTTGTCGATCATCGGGCCAACGGA
GGGTACCGCGTAGCCCAGCTCACGCTGCCGGAGCTGCGTGAGATCTATTTCACCCGTGGTGTTCTCGAGCGGGCCGCACT
TGCTCAGGCCGCTGCGCGTGCTACGCCGGAGGACGTGGATCGCGCGCTCGCCGAGCATCAGCTGCTGCAACAGGCAACCG
TCGAAGACGACGCCCGTGCTTTTCATGTGCACTCCCGGCGTTTTCATCGCGCCCTGGTACTGCCCTGCGGCATGCACCGG
CTCTTACACATGTTCGAGGCAACGTGGAATCTGACCGAACCTTTTCAGGTGATGCGAACGGTGTCGGCATCCGATCAATT
GCAGCTACATGCCGATCATGAGGCGATGATCACAGCGGCGGCAAGCCGGGATATTGACACCTTGCTGTCCGTCGCGGCTA
CCCATCACGATCGCCTGGAGTCGGTGATAGTTGCTGCCGCAGGACAATTGGATGTGGTCGCCGAGGCATAG

Upstream 100 bases:

>100_bases
GTGCCCATGAAACGTTCGTGTTAACTCCGTGTCGCCAGCGATGGCGCCGGGACGTCACCACTGACAAGATCGGGTTCTGG
CCGACGGCGATGGAGGGCGA

Downstream 100 bases:

>100_bases
CGGAGTGGGGCCGCTGGGAAAATATAGGCAGCCGGCAACCTGGCCGCAACACGTTCGATCTAGCGTCGCTTGCGCGTCCG
GGTGGGTATGCGCGGGTGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Carbon starvation induced regulator [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSRTFRYRRLINELRATRSGHDQTSVLDGLRRAILDGAAPPGSMIPIGEVADTYQISPIPVREALKTLVAEGLVDHRANG
GYRVAQLTLPELREIYFTRGVLERAALAQAAARATPEDVDRALAEHQLLQQATVEDDARAFHVHSRRFHRALVLPCGMHR
LLHMFEATWNLTEPFQVMRTVSASDQLQLHADHEAMITAAASRDIDTLLSVAATHHDRLESVIVAAAGQLDVVAEA

Sequences:

>Translated_236_residues
MSRTFRYRRLINELRATRSGHDQTSVLDGLRRAILDGAAPPGSMIPIGEVADTYQISPIPVREALKTLVAEGLVDHRANG
GYRVAQLTLPELREIYFTRGVLERAALAQAAARATPEDVDRALAEHQLLQQATVEDDARAFHVHSRRFHRALVLPCGMHR
LLHMFEATWNLTEPFQVMRTVSASDQLQLHADHEAMITAAASRDIDTLLSVAATHHDRLESVIVAAAGQLDVVAEA
>Mature_235_residues
SRTFRYRRLINELRATRSGHDQTSVLDGLRRAILDGAAPPGSMIPIGEVADTYQISPIPVREALKTLVAEGLVDHRANGG
YRVAQLTLPELREIYFTRGVLERAALAQAAARATPEDVDRALAEHQLLQQATVEDDARAFHVHSRRFHRALVLPCGMHRL
LHMFEATWNLTEPFQVMRTVSASDQLQLHADHEAMITAAASRDIDTLLSVAATHHDRLESVIVAAAGQLDVVAEA

Specific function: Modulates expression of csiD and lhgO in a temporal manner during entry into stationary phase or during the first few hours of carbon starvation [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=189, Percent_Identity=31.2169312169312, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26074; Mature: 25943

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTFRYRRLINELRATRSGHDQTSVLDGLRRAILDGAAPPGSMIPIGEVADTYQISPIP
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
VREALKTLVAEGLVDHRANGGYRVAQLTLPELREIYFTRGVLERAALAQAAARATPEDVD
HHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RALAEHQLLQQATVEDDARAFHVHSRRFHRALVLPCGMHRLLHMFEATWNLTEPFQVMRT
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VSASDQLQLHADHEAMITAAASRDIDTLLSVAATHHDRLESVIVAAAGQLDVVAEA
HCCCCCEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
>Mature Secondary Structure 
SRTFRYRRLINELRATRSGHDQTSVLDGLRRAILDGAAPPGSMIPIGEVADTYQISPIP
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
VREALKTLVAEGLVDHRANGGYRVAQLTLPELREIYFTRGVLERAALAQAAARATPEDVD
HHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RALAEHQLLQQATVEDDARAFHVHSRRFHRALVLPCGMHRLLHMFEATWNLTEPFQVMRT
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
VSASDQLQLHADHEAMITAAASRDIDTLLSVAATHHDRLESVIVAAAGQLDVVAEA
HCCCCCEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8297211; 7984428 [H]