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The map label for this gene is pdxS [H]

Identifier: 169629976

GI number: 169629976

Start: 2944051

End: 2945073

Strand: Reverse

Name: pdxS [H]

Synonym: MAB_2892c

Alternate gene names: 169629976

Gene position: 2945073-2944051 (Counterclockwise)

Preceding gene: 169629977

Following gene: 169629975

Centisome position: 58.12

GC content: 65.49

Gene sequence:

>1023_bases
GTGCGCCAGTCCAAATCGGGTGAGGCGCGTCACCGCACCTCCCGCCACAAAATCGCTGGTGCGGCCGCATTAGACTGGTC
GCAGACCCCGAGATTCAGGAGCCCCCAGTTGACTAGCACGACCAATGGAACGTCCCCCGAGACCGGCACCGGTACCGCTC
GCGTCAAGCGCGGTATGGCCGAGATGCTCAAGGGCGGCGTGATCATGGACGTTGTTACGCCCGAGCAGGCAAAGATCGCC
GAAGACGCCGGCGCCGTGGCCGTGATGGCGCTGGAGCGGGTGCCCGCGGACATCCGCGCCCAGGGTGGCGTGTCGCGCAT
GAGCGACCCGGACATGATCGACGGCATCATCAGCGCGGTCAGCATCCCGGTTATGGCCAAGGCCCGCATCGGGCACTTCG
TCGAGGCACAGATCCTGCAGAGCCTCGGTGTCGACTACATCGATGAGTCGGAGGTGCTGACCCCTGCCGATTACACCAAC
CACATCGACAAGTGGAAGTTCACCGTGCCGTTCGTGTGTGGTGCCACCAACCTGGGCGAGGCGCTGCGCCGCATCACCGA
GGGCGCGGCCATGATTCGCTCCAAGGGCGAAGCCGGCACCGGCGATGTGTCCAACGCGACCACACACATGCGCAAGATCG
GCGGCGAGATTCGCCGGCTCACCTCGCTGGCTGAGGACGAGTTGTACGTTGCCGCAAAGGAACTGCAGGCACCATACGAG
CTCGTTGTCGAGGTTGCGCGCGCCGGCAAGCTGCCGGTCACGCTGTTCACGGCCGGCGGTATCGCTACTCCGGCCGATGC
GGCGATGATGATGCAGCTTGGCGCCGAAGGCGTGTTCGTGGGTTCGGGCATCTTCAAGTCCGGTAACCCGGAGCAGCGTG
CCGCGGCGATCGTCAAGGCCACCACCTTCTATGACGACCCGGATGTGCTGGCCAAGGTGTCGCGTGGCCTGGGCGAGGCG
ATGGTCGGTATCAATGTGGAGGACATCGCGCAGCCGCACAGGCTCGCCGAGCGCGGCTGGTAG

Upstream 100 bases:

>100_bases
GCGCTCACGGCTGCGGGGGAGCAGGTGTACCCGAATCAGCTGGGAGAACTGCTCTGTGAGGCCGCCGCTGCGGCCGATGC
GGTAGCCCCCGGCGCACGGC

Downstream 100 bases:

>100_bases
AACTAGCGGATGGCCGATATCGAGGAGATCCTTACTCTCGAGCAGCTGGAGAAGGACATCTTCCGGGGCAACGTGACCCC
CAGCAATCTTCGTCGCACCT

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MRQSKSGEARHRTSRHKIAGAAALDWSQTPRFRSPQLTSTTNGTSPETGTGTARVKRGMAEMLKGGVIMDVVTPEQAKIA
EDAGAVAVMALERVPADIRAQGGVSRMSDPDMIDGIISAVSIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTN
HIDKWKFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNATTHMRKIGGEIRRLTSLAEDELYVAAKELQAPYE
LVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPEQRAAAIVKATTFYDDPDVLAKVSRGLGEA
MVGINVEDIAQPHRLAERGW

Sequences:

>Translated_340_residues
MRQSKSGEARHRTSRHKIAGAAALDWSQTPRFRSPQLTSTTNGTSPETGTGTARVKRGMAEMLKGGVIMDVVTPEQAKIA
EDAGAVAVMALERVPADIRAQGGVSRMSDPDMIDGIISAVSIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTN
HIDKWKFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNATTHMRKIGGEIRRLTSLAEDELYVAAKELQAPYE
LVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPEQRAAAIVKATTFYDDPDVLAKVSRGLGEA
MVGINVEDIAQPHRLAERGW
>Mature_340_residues
MRQSKSGEARHRTSRHKIAGAAALDWSQTPRFRSPQLTSTTNGTSPETGTGTARVKRGMAEMLKGGVIMDVVTPEQAKIA
EDAGAVAVMALERVPADIRAQGGVSRMSDPDMIDGIISAVSIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTN
HIDKWKFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNATTHMRKIGGEIRRLTSLAEDELYVAAKELQAPYE
LVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPEQRAAAIVKATTFYDDPDVLAKVSRGLGEA
MVGINVEDIAQPHRLAERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=291, Percent_Identity=63.9175257731959, Blast_Score=376, Evalue=1e-105,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=64.9659863945578, Blast_Score=369, Evalue=1e-103,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=64.6258503401361, Blast_Score=368, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 36146; Mature: 36146

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQSKSGEARHRTSRHKIAGAAALDWSQTPRFRSPQLTSTTNGTSPETGTGTARVKRGMA
CCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
EMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRAQGGVSRMSDPDMIDGIISAV
HHHCCCEEEEEECCCHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHH
SIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTNHIDKWKFTVPFVCGATNLGE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCEEEEECEEECCCHHHH
ALRRITEGAAMIRSKGEAGTGDVSNATTHMRKIGGEIRRLTSLAEDELYVAAKELQAPYE
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPEQRAAAIVKA
HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
TTFYDDPDVLAKVSRGLGEAMVGINVEDIAQPHRLAERGW
HCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRQSKSGEARHRTSRHKIAGAAALDWSQTPRFRSPQLTSTTNGTSPETGTGTARVKRGMA
CCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
EMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRAQGGVSRMSDPDMIDGIISAV
HHHCCCEEEEEECCCHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHH
SIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTNHIDKWKFTVPFVCGATNLGE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCEEEEECEEECCCHHHH
ALRRITEGAAMIRSKGEAGTGDVSNATTHMRKIGGEIRRLTSLAEDELYVAAKELQAPYE
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPEQRAAAIVKA
HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
TTFYDDPDVLAKVSRGLGEAMVGINVEDIAQPHRLAERGW
HCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA