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The map label for this gene is ycaJ [C]

Identifier: 169629937

GI number: 169629937

Start: 2902454

End: 2903809

Strand: Reverse

Name: ycaJ [C]

Synonym: MAB_2853c

Alternate gene names: 169629937

Gene position: 2903809-2902454 (Counterclockwise)

Preceding gene: 169629938

Following gene: 169629936

Centisome position: 57.31

GC content: 67.11

Gene sequence:

>1356_bases
GTGTCAGACAGCCTGTTCGACGTGCCAGGGGGCGGATTCGACTCGTCCTCCGCGGACCCCGGGGTGCCGCCTAATGCGCC
GCTTGCTGTCCGGATGCGCCCAGCGACACTTGATGAAGTGGTGGGACAGGGGCACCTGCTCAAACAGGGATCTCCGTTGC
GCCGTCTGGTCGATGGCTCCGGGGCCGCCTCGGTCATCTTGTACGGACCTCCTGGCACCGGCAAAACCACTCTCGCATCG
CTGATTTCAGGAGCTACCGGCCGCAGGTTCGAGGCGTTGTCGGCGCTGTCAGCCGGAGTCAAAGAGGTGCGGGCCGTCAT
AGAGAACTCCCGCACCGCCCTCGCTTATCACGGCCAGCAGACGGTGTTGTTCATCGACGAGGTGCACAGGTTCTCCAAGA
CCCAGCAGGACGCGCTGCTGGCCGCCGTCGAGAACCGGGTGGTGTTGTTGGTGGCCGCCACCACCGAGAACCCGTCCTTC
TCCGTGGTGGCCCCGTTGCTTTCGCGTTCACTGATCTTGCAGCTGCAACCTTTGGCCGACAACGATATTCGTGAGGTGCT
CACCCGGGCTATCGCCGATGAACGGGGGCTCGGCGGGGCCGTGGCCGTGGACCCGGAAGCGCTGAGCCTGCTGGTGCAGC
TCGCCGCTGGTGACGCGCGGCGAGCGCTGACCGCCCTGGAGGTCGCCTTTGAAACAGCTGGAGGGGCGGGCTCCGTCATA
TCCGTGGAGGTGGTGGAGCAGTCGGTGGACCGCGCCGCGGTGCGTTACGACCGCGATGGTGACCAGCACTACGACGTGGT
GAGCGCCTTCATCAAGTCGATCCGCGGTTCCGACGTGGATGCCGCGCTGCACTATCTGGCGCGCATGCTGACGGCGGGGG
AGGACCCCCGCTTCGTCGCGCGGCGACTGATGATCCTGGCGAGCGAGGACGTCGGCATGGCCGATCCCACGGCGTTGCCG
CTGGCCGTGGCGGCGGCCCAAACGGTGCAACTGATCGGGATGCCGGAGGCACAGCTGACCCTCACCCACGCAACGATCCA
CCTGGCGACCGCGCCGAAATCGGGAGCGGTCCCGGCCGCGTTGGGTGCGGCGATGGGCGATATTCGTGAGGGCAAGGCCG
GGCTGGTTCCGCCGCATCTACGCGACGGGCACTACTCCGGGGCCGCCAAACTCGGCAATGCCGTCGGCTACGTCTATCCG
CACAACGACCGTGACGGCGTGGTGGCGCAGCAGTATCCGCCGGACGAGTTGGTGGGGGCCGACTACTACCAGCCCACCGA
TCACGGCAACGAACGCGAGATCGGTTCGCGGCTGGAGAAGCTGCGGGCCATCGTGCGGCGCGGCCTGAAGCGCTGA

Upstream 100 bases:

>100_bases
GACCTGGAGCCCGCCCTGATCGGCCGCGTCGAGGAACTTATCGATTTCGTCACGCAGCCGGCGGGCTGAACCCGTCGGCC
GGACGTGGTAAGCCTGAGAC

Downstream 100 bases:

>100_bases
TCGAGCGTGCGGATGTGGTCGGTTATTGCTCACACATCGACACGAATCGCACTCTCGGCATACTGAAGACATGACGTTGC
GTATGCGTTTGGCTGCGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MSDSLFDVPGGGFDSSSADPGVPPNAPLAVRMRPATLDEVVGQGHLLKQGSPLRRLVDGSGAASVILYGPPGTGKTTLAS
LISGATGRRFEALSALSAGVKEVRAVIENSRTALAYHGQQTVLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSF
SVVAPLLSRSLILQLQPLADNDIREVLTRAIADERGLGGAVAVDPEALSLLVQLAAGDARRALTALEVAFETAGGAGSVI
SVEVVEQSVDRAAVRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMLTAGEDPRFVARRLMILASEDVGMADPTALP
LAVAAAQTVQLIGMPEAQLTLTHATIHLATAPKSGAVPAALGAAMGDIREGKAGLVPPHLRDGHYSGAAKLGNAVGYVYP
HNDRDGVVAQQYPPDELVGADYYQPTDHGNEREIGSRLEKLRAIVRRGLKR

Sequences:

>Translated_451_residues
MSDSLFDVPGGGFDSSSADPGVPPNAPLAVRMRPATLDEVVGQGHLLKQGSPLRRLVDGSGAASVILYGPPGTGKTTLAS
LISGATGRRFEALSALSAGVKEVRAVIENSRTALAYHGQQTVLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSF
SVVAPLLSRSLILQLQPLADNDIREVLTRAIADERGLGGAVAVDPEALSLLVQLAAGDARRALTALEVAFETAGGAGSVI
SVEVVEQSVDRAAVRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMLTAGEDPRFVARRLMILASEDVGMADPTALP
LAVAAAQTVQLIGMPEAQLTLTHATIHLATAPKSGAVPAALGAAMGDIREGKAGLVPPHLRDGHYSGAAKLGNAVGYVYP
HNDRDGVVAQQYPPDELVGADYYQPTDHGNEREIGSRLEKLRAIVRRGLKR
>Mature_450_residues
SDSLFDVPGGGFDSSSADPGVPPNAPLAVRMRPATLDEVVGQGHLLKQGSPLRRLVDGSGAASVILYGPPGTGKTTLASL
ISGATGRRFEALSALSAGVKEVRAVIENSRTALAYHGQQTVLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSFS
VVAPLLSRSLILQLQPLADNDIREVLTRAIADERGLGGAVAVDPEALSLLVQLAAGDARRALTALEVAFETAGGAGSVIS
VEVVEQSVDRAAVRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMLTAGEDPRFVARRLMILASEDVGMADPTALPL
AVAAAQTVQLIGMPEAQLTLTHATIHLATAPKSGAVPAALGAAMGDIREGKAGLVPPHLRDGHYSGAAKLGNAVGYVYPH
NDRDGVVAQQYPPDELVGADYYQPTDHGNEREIGSRLEKLRAIVRRGLKR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=38.8636363636364, Blast_Score=280, Evalue=2e-75,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=35.9090909090909, Blast_Score=240, Evalue=2e-63,
Organism=Homo sapiens, GI31563534, Length=280, Percent_Identity=26.0714285714286, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787119, Length=421, Percent_Identity=43.2304038004751, Blast_Score=322, Evalue=3e-89,
Organism=Escherichia coli, GI1786676, Length=276, Percent_Identity=28.9855072463768, Blast_Score=62, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=423, Percent_Identity=38.7706855791962, Blast_Score=272, Evalue=1e-73,
Organism=Saccharomyces cerevisiae, GI6324039, Length=228, Percent_Identity=28.5087719298246, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI18859927, Length=254, Percent_Identity=25.5905511811024, Blast_Score=75, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47421; Mature: 47290

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSLFDVPGGGFDSSSADPGVPPNAPLAVRMRPATLDEVVGQGHLLKQGSPLRRLVDGS
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCEECCCCHHHHHHCCC
GAASVILYGPPGTGKTTLASLISGATGRRFEALSALSAGVKEVRAVIENSRTALAYHGQQ
CCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCE
TVLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLQPLAD
EEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHCCHHEEEEECCCC
NDIREVLTRAIADERGLGGAVAVDPEALSLLVQLAAGDARRALTALEVAFETAGGAGSVI
CHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEE
SVEVVEQSVDRAAVRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMLTAGEDPRFVA
EHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHH
RRLMILASEDVGMADPTALPLAVAAAQTVQLIGMPEAQLTLTHATIHLATAPKSGAVPAA
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCEEEEEEEEEEEEECCCCCCCHHH
LGAAMGDIREGKAGLVPPHLRDGHYSGAAKLGNAVGYVYPHNDRDGVVAQQYPPDELVGA
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCEEECCCCCHHCCCC
DYYQPTDHGNEREIGSRLEKLRAIVRRGLKR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDSLFDVPGGGFDSSSADPGVPPNAPLAVRMRPATLDEVVGQGHLLKQGSPLRRLVDGS
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCEECCCCHHHHHHCCC
GAASVILYGPPGTGKTTLASLISGATGRRFEALSALSAGVKEVRAVIENSRTALAYHGQQ
CCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCE
TVLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLQPLAD
EEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHCCHHEEEEECCCC
NDIREVLTRAIADERGLGGAVAVDPEALSLLVQLAAGDARRALTALEVAFETAGGAGSVI
CHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEE
SVEVVEQSVDRAAVRYDRDGDQHYDVVSAFIKSIRGSDVDAALHYLARMLTAGEDPRFVA
EHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHH
RRLMILASEDVGMADPTALPLAVAAAQTVQLIGMPEAQLTLTHATIHLATAPKSGAVPAA
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCEEEEEEEEEEEEECCCCCCCHHH
LGAAMGDIREGKAGLVPPHLRDGHYSGAAKLGNAVGYVYPHNDRDGVVAQQYPPDELVGA
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCEEECCCCCHHCCCC
DYYQPTDHGNEREIGSRLEKLRAIVRRGLKR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]