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The map label for this gene is yqgF [C]

Identifier: 169629934

GI number: 169629934

Start: 2898651

End: 2899151

Strand: Reverse

Name: yqgF [C]

Synonym: MAB_2850c

Alternate gene names: 169629934

Gene position: 2899151-2898651 (Counterclockwise)

Preceding gene: 169629935

Following gene: 169629933

Centisome position: 57.21

GC content: 67.27

Gene sequence:

>501_bases
GTGCCCGATACCGCAGCCCCCACCCCGGATCGTCCTGGCCCCGACGACCCGGGGCGCGGCCGTCGGCTGGGCGTGGACGT
GGGTACCGTCAGAATTGGTATCTCCTCGAGCGATCCTGACGGAATTCTCGCCACCCCGGTCGAGACAGTCTCGCGGGATG
CTAAGGAAGACAGTGATTTTCGGCGTATCGCGGAGCTGGTCGAGGAGATGAGCGTGGTTGAGGTCGTGGTCGGCCTCCCG
CGTAACCTGCGTGAGGGCACGGGATCGTCGGCGCGCGACGCGGCCGGATTCGCCCGTGAGCTGGGCGAACGGATAGCTCC
GGTGCCGGTGCGGCTGGTGGACGAGCGTTTCACTACTACTACCGCCCAGCGTTCCCTGCGTGAGGCAGGAGTACGGTCTC
GTCAGCAGCGCGGCATCATCGACCAGGCGGCGGCGGTGGCCATTCTGCAGGATTGGCTTGAGCAGCGGCGCCGGTGCGGC
AGTGAAGGGGACACGCCTTGA

Upstream 100 bases:

>100_bases
GCGGCAAGGCCGACACCGCGCAGGGGTCTGGCAAGGATCCGGCGGGCATCGACGCGGCACTGCAGGCGCTGCGTGCACAG
ATCCGCCGGGCCTGAGCCGA

Downstream 100 bases:

>100_bases
GCGACTGGCGCGACTGGGACGATCGCCAGGAGCACGATGACGACTGGGGAGGCGGCCGCCGGGCCGTGCCGGTCGCCGTT
GGGCCCCGTCCGCGAGAGAC

Product: putative Holliday junction resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MPDTAAPTPDRPGPDDPGRGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAELVEEMSVVEVVVGLP
RNLREGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSLREAGVRSRQQRGIIDQAAAVAILQDWLEQRRRCG
SEGDTP

Sequences:

>Translated_166_residues
MPDTAAPTPDRPGPDDPGRGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAELVEEMSVVEVVVGLP
RNLREGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSLREAGVRSRQQRGIIDQAAAVAILQDWLEQRRRCG
SEGDTP
>Mature_165_residues
PDTAAPTPDRPGPDDPGRGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDFRRIAELVEEMSVVEVVVGLPR
NLREGTGSSARDAAGFARELGERIAPVPVRLVDERFTTTTAQRSLREAGVRSRQQRGIIDQAAAVAILQDWLEQRRRCGS
EGDTP

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_MYCA9 (B1MCF8)

Other databases:

- EMBL:   CU458896
- RefSeq:   YP_001703583.1
- ProteinModelPortal:   B1MCF8
- SMR:   B1MCF8
- EnsemblBacteria:   EBMYCT00000008732
- GeneID:   5965358
- GenomeReviews:   CU458896_GR
- KEGG:   mab:MAB_2850c
- GeneTree:   EBGT00050000017543
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- BioCyc:   MABS561007:MAB_2850C-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17928; Mature: 17797

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDTAAPTPDRPGPDDPGRGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDF
CCCCCCCCCCCCCCCCCCCCCEECCEECEEEEECCCCCCCCEEECCHHHHHHHCCCCHHH
RRIAELVEEMSVVEVVVGLPRNLREGTGSSARDAAGFARELGERIAPVPVRLVDERFTTT
HHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TAQRSLREAGVRSRQQRGIIDQAAAVAILQDWLEQRRRCGSEGDTP
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PDTAAPTPDRPGPDDPGRGRRLGVDVGTVRIGISSSDPDGILATPVETVSRDAKEDSDF
CCCCCCCCCCCCCCCCCCCCEECCEECEEEEECCCCCCCCEEECCHHHHHHHCCCCHHH
RRIAELVEEMSVVEVVVGLPRNLREGTGSSARDAAGFARELGERIAPVPVRLVDERFTTT
HHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TAQRSLREAGVRSRQQRGIIDQAAAVAILQDWLEQRRRCGSEGDTP
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA