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The map label for this gene is nusB [H]

Identifier: 169629920

GI number: 169629920

Start: 2887130

End: 2887651

Strand: Reverse

Name: nusB [H]

Synonym: MAB_2836c

Alternate gene names: 169629920

Gene position: 2887651-2887130 (Counterclockwise)

Preceding gene: 169629921

Following gene: 169629918

Centisome position: 56.99

GC content: 69.16

Gene sequence:

>522_bases
ATGGCTGATATCGGTTCTCATTCGGCCCGGGCCGGCGATGAGCCGCCGGGGCGAAGAGTGTCTGGATCGGCCAAGGGGGG
ACGTCGCAAGGCCCGCAAGCGGGCCGTGGACCTGCTGTTCGAGGCCGAGGCGCGCGAGATGACGGCCGCCGGGGTGGCCG
ACGAGCGTCGTGCGCTGGCGGCCTCGAAACCAGACATCGACCCGCTGAACCCGTACACGGTGTCCGTCGCGCACGGCGTC
ACCGAGCATGCCGCGCACATCGACGAGCTGATTTCCTCGCACCTCCAGGGCTGGACGCTGGCCCGGTTGCCTGCGGTCGA
CCGTGCGATCCTGCGGGTCGCGGTGTGGGAGCTGTTGCACGCCCAGGATGTCCCCGAGGTGGTGGCGGTGGACGAGGCGG
TCGAGCTGGCCAAGCAGCTCTCCACCGATGAATCGCCGGCGTTCGTCAATGGGGTACTGGGCCAGCTGATGCTGGTGACT
CCGCACATCCGCGGCAGCTCGGCGCCCAGTTCGACCGACTAG

Upstream 100 bases:

>100_bases
ACGGTGGAGACCGGTGCCGAGATTCAGGTGCCGCTGTTCATCAACACCGGTGACCGGCTGAAGGTGGATACGCGCGACGC
CAGCTACCTCGGCCGTGTGA

Downstream 100 bases:

>100_bases
TTCACGCGAGCTGTATTTCGAATACCGGGATCACGCGGTCGGTCGCCGCCTCGTATTCGGCGAACCCCGGAGCGCGCTGT
TTCACGATTTCGAACACGCG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MADIGSHSARAGDEPPGRRVSGSAKGGRRKARKRAVDLLFEAEAREMTAAGVADERRALAASKPDIDPLNPYTVSVAHGV
TEHAAHIDELISSHLQGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAVELAKQLSTDESPAFVNGVLGQLMLVT
PHIRGSSAPSSTD

Sequences:

>Translated_173_residues
MADIGSHSARAGDEPPGRRVSGSAKGGRRKARKRAVDLLFEAEAREMTAAGVADERRALAASKPDIDPLNPYTVSVAHGV
TEHAAHIDELISSHLQGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAVELAKQLSTDESPAFVNGVLGQLMLVT
PHIRGSSAPSSTD
>Mature_172_residues
ADIGSHSARAGDEPPGRRVSGSAKGGRRKARKRAVDLLFEAEAREMTAAGVADERRALAASKPDIDPLNPYTVSVAHGVT
EHAAHIDELISSHLQGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAVELAKQLSTDESPAFVNGVLGQLMLVTP
HIRGSSAPSSTD

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=112, Percent_Identity=35.7142857142857, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 18377; Mature: 18246

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIGSHSARAGDEPPGRRVSGSAKGGRRKARKRAVDLLFEAEAREMTAAGVADERRALA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
ASKPDIDPLNPYTVSVAHGVTEHAAHIDELISSHLQGWTLARLPAVDRAILRVAVWELLH
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AQDVPEVVAVDEAVELAKQLSTDESPAFVNGVLGQLMLVTPHIRGSSAPSSTD
HCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADIGSHSARAGDEPPGRRVSGSAKGGRRKARKRAVDLLFEAEAREMTAAGVADERRALA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
ASKPDIDPLNPYTVSVAHGVTEHAAHIDELISSHLQGWTLARLPAVDRAILRVAVWELLH
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AQDVPEVVAVDEAVELAKQLSTDESPAFVNGVLGQLMLVTPHIRGSSAPSSTD
HCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA