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The map label for this gene is ubiD [H]

Identifier: 169629851

GI number: 169629851

Start: 2815876

End: 2817393

Strand: Direct

Name: ubiD [H]

Synonym: MAB_2767

Alternate gene names: 169629851

Gene position: 2815876-2817393 (Clockwise)

Preceding gene: 169629850

Following gene: 169629852

Centisome position: 55.57

GC content: 61.4

Gene sequence:

>1518_bases
ATGAGCGAAATACCAATAAGAATGGAAATCCATATGGCGTTCAATGACCTCCGCCGCTACCTCGCCGACCTGGAAGCACA
CGGCGAGCTGCGCACCATCAAGACTCCCGTGAGCACCGAGATCCAACTTGGGGCCATCGCCCGACTCGCATGCGAAACAT
ACGGTCCGGCAGCACTTTTCGAAAACCTCGTGGGCTACCCGACGTTTCGCGGACTCGCCGCGTTCGAGACATATTCCGGC
AATCCAGACAATCGAGCCTGGCGCCTCGCCCGCGCCCTGGGGCTATCCGACGACACCACTGGTGATCAGATCGTGGACTT
CCTGGCGGGGTTTCGCGATACCGCGGGCGTCGCCCCAGTTTTGGTTGAGACCGGTCCGGTGCACGAGAACATCGTCCGCG
ACCGCGGCGAGTTGTTGGACTACCTGCCGATTCCACACCTGCACCCCGGAGACGGCGGCCCCTACGTAAACACCATCGGC
TTCTTCGTGCTGGAATCCCCGGACCGCAGCTGGGTGAACTGGGCGGTAGCGCGCTGTATGAAACTCGACGGTGACCGGAT
GGTCGGAATGACCGCGGTGATGCAGCACATCGGCATGTTGCGCCGAGAATGGGACAAGATCGGCACGAGCGTTCCGTTCG
CCCTCGTCCTCGGCGCCGACCCGATCACGACGCTGATTTCAGGAGGCCCTTTGGCCAAGTTCGGCGCCAGTGAGGGTGAC
ATCATCGGAGCCATTCGGGGTGAGCCGCTTGAGGTCGTCGAGTGTGTGACGAGCTCGCTCCGCGTACCCGCACACGCGGA
GATCGTCATCGAGGGATACATCGACCTGACCGAATCCGCGGACGAAGGACCGATGGCCGAGTATCACGGTTACATCGACA
AGGCGAAAAACACCACCGGCGCACCAGATTTCGGCGTGTACCACATCACCGCGGTGACCCACCGCAATGACGCCATCTAT
CCATCCACCTGTGCCGGAAAACCGGTTGACGAAGACCACACCATCACCGGACCAGGAGTTGCCGCGGCAAGCCTCAACGC
ACTACGGGCAGCGAGCCTGCCCGTAGAGAAGGCCTGGATGGTGCCTGAGTCCGCAAGCCACGTGCTGGCTGTGACTGTCA
GCGATGGTTGGTCTGGGGAATTCCCCGACGCAAATGAGCTCTGCCGCAAGATCGGTAACGCGGTCAAGACGATGGACCAT
TCGGCGTACTGGGTACAGCGAATCCTGGTTACCGACAACGATATCGACCCGACTTCTCCGTCGGACCTGTGGTGGGCGTA
CGCAACCCGGTGCCGCCCAGGCGATGACTCCATCATCTTGGAGGATGTGCCCATCATGGCGCTGTCACCGATCGTCAACA
CTCGCGAAGAACGGACTAAGACTCGCGGTCGCGTGGAAGTGCTCAACTGCCTCATTCCGCCCTATGCGGATGATCTCTCG
GTCACGTCGGCCGCGCTGCGTCAGGCCTACCCCCACGATGCGATCGCGTTCGCCGAACGAACGTATCTCGGCGAGTAG

Upstream 100 bases:

>100_bases
ACCATCGACGACCTGGTGAACCACACGGTGATGCGCATCCTGGACGCCGCCGGCATCGAGAACGAAACCGCGCCGCGTTG
GCGGGGACTTCCTGCTCGAA

Downstream 100 bases:

>100_bases
CCGGGCTCGTCGCGCCTGCCGCGCCAGCTCGTCACGGCAATTCGGTCACGCCTGGGTATTGACCCGCCCCCGCCATCGGC
ATATATTACCGACTGGTCAA

Product: hypothetical protein

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 505; Mature: 504

Protein sequence:

>505_residues
MSEIPIRMEIHMAFNDLRRYLADLEAHGELRTIKTPVSTEIQLGAIARLACETYGPAALFENLVGYPTFRGLAAFETYSG
NPDNRAWRLARALGLSDDTTGDQIVDFLAGFRDTAGVAPVLVETGPVHENIVRDRGELLDYLPIPHLHPGDGGPYVNTIG
FFVLESPDRSWVNWAVARCMKLDGDRMVGMTAVMQHIGMLRREWDKIGTSVPFALVLGADPITTLISGGPLAKFGASEGD
IIGAIRGEPLEVVECVTSSLRVPAHAEIVIEGYIDLTESADEGPMAEYHGYIDKAKNTTGAPDFGVYHITAVTHRNDAIY
PSTCAGKPVDEDHTITGPGVAAASLNALRAASLPVEKAWMVPESASHVLAVTVSDGWSGEFPDANELCRKIGNAVKTMDH
SAYWVQRILVTDNDIDPTSPSDLWWAYATRCRPGDDSIILEDVPIMALSPIVNTREERTKTRGRVEVLNCLIPPYADDLS
VTSAALRQAYPHDAIAFAERTYLGE

Sequences:

>Translated_505_residues
MSEIPIRMEIHMAFNDLRRYLADLEAHGELRTIKTPVSTEIQLGAIARLACETYGPAALFENLVGYPTFRGLAAFETYSG
NPDNRAWRLARALGLSDDTTGDQIVDFLAGFRDTAGVAPVLVETGPVHENIVRDRGELLDYLPIPHLHPGDGGPYVNTIG
FFVLESPDRSWVNWAVARCMKLDGDRMVGMTAVMQHIGMLRREWDKIGTSVPFALVLGADPITTLISGGPLAKFGASEGD
IIGAIRGEPLEVVECVTSSLRVPAHAEIVIEGYIDLTESADEGPMAEYHGYIDKAKNTTGAPDFGVYHITAVTHRNDAIY
PSTCAGKPVDEDHTITGPGVAAASLNALRAASLPVEKAWMVPESASHVLAVTVSDGWSGEFPDANELCRKIGNAVKTMDH
SAYWVQRILVTDNDIDPTSPSDLWWAYATRCRPGDDSIILEDVPIMALSPIVNTREERTKTRGRVEVLNCLIPPYADDLS
VTSAALRQAYPHDAIAFAERTYLGE
>Mature_504_residues
SEIPIRMEIHMAFNDLRRYLADLEAHGELRTIKTPVSTEIQLGAIARLACETYGPAALFENLVGYPTFRGLAAFETYSGN
PDNRAWRLARALGLSDDTTGDQIVDFLAGFRDTAGVAPVLVETGPVHENIVRDRGELLDYLPIPHLHPGDGGPYVNTIGF
FVLESPDRSWVNWAVARCMKLDGDRMVGMTAVMQHIGMLRREWDKIGTSVPFALVLGADPITTLISGGPLAKFGASEGDI
IGAIRGEPLEVVECVTSSLRVPAHAEIVIEGYIDLTESADEGPMAEYHGYIDKAKNTTGAPDFGVYHITAVTHRNDAIYP
STCAGKPVDEDHTITGPGVAAASLNALRAASLPVEKAWMVPESASHVLAVTVSDGWSGEFPDANELCRKIGNAVKTMDHS
AYWVQRILVTDNDIDPTSPSDLWWAYATRCRPGDDSIILEDVPIMALSPIVNTREERTKTRGRVEVLNCLIPPYADDLSV
TSAALRQAYPHDAIAFAERTYLGE

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=462, Percent_Identity=30.3030303030303, Blast_Score=174, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6320748, Length=484, Percent_Identity=31.8181818181818, Blast_Score=246, Evalue=5e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 54967; Mature: 54836

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIPIRMEIHMAFNDLRRYLADLEAHGELRTIKTPVSTEIQLGAIARLACETYGPAALF
CCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHCCCHHHHH
ENLVGYPTFRGLAAFETYSGNPDNRAWRLARALGLSDDTTGDQIVDFLAGFRDTAGVAPV
HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEE
LVETGPVHENIVRDRGELLDYLPIPHLHPGDGGPYVNTIGFFVLESPDRSWVNWAVARCM
EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHH
KLDGDRMVGMTAVMQHIGMLRREWDKIGTSVPFALVLGADPITTLISGGPLAKFGASEGD
HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCHHCCCCCCC
IIGAIRGEPLEVVECVTSSLRVPAHAEIVIEGYIDLTESADEGPMAEYHGYIDKAKNTTG
EEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCC
APDFGVYHITAVTHRNDAIYPSTCAGKPVDEDHTITGPGVAAASLNALRAASLPVEKAWM
CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHEEC
VPESASHVLAVTVSDGWSGEFPDANELCRKIGNAVKTMDHSAYWVQRILVTDNDIDPTSP
CCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHEEEEEECCCCCCCCC
SDLWWAYATRCRPGDDSIILEDVPIMALSPIVNTREERTKTRGRVEVLNCLIPPYADDLS
CHHHHHHHHCCCCCCCCEEEECCCCEEECCHHCCHHHHHHHCCHHHHHHHHCCCCCCCHH
VTSAALRQAYPHDAIAFAERTYLGE
HHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SEIPIRMEIHMAFNDLRRYLADLEAHGELRTIKTPVSTEIQLGAIARLACETYGPAALF
CCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHCCCHHHHH
ENLVGYPTFRGLAAFETYSGNPDNRAWRLARALGLSDDTTGDQIVDFLAGFRDTAGVAPV
HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEE
LVETGPVHENIVRDRGELLDYLPIPHLHPGDGGPYVNTIGFFVLESPDRSWVNWAVARCM
EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHH
KLDGDRMVGMTAVMQHIGMLRREWDKIGTSVPFALVLGADPITTLISGGPLAKFGASEGD
HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCHHCCCCCCC
IIGAIRGEPLEVVECVTSSLRVPAHAEIVIEGYIDLTESADEGPMAEYHGYIDKAKNTTG
EEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCC
APDFGVYHITAVTHRNDAIYPSTCAGKPVDEDHTITGPGVAAASLNALRAASLPVEKAWM
CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHEEC
VPESASHVLAVTVSDGWSGEFPDANELCRKIGNAVKTMDHSAYWVQRILVTDNDIDPTSP
CCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHEEEEEECCCCCCCCC
SDLWWAYATRCRPGDDSIILEDVPIMALSPIVNTREERTKTRGRVEVLNCLIPPYADDLS
CHHHHHHHHCCCCCCCCEEEECCCCEEECCHHCCHHHHHHHCCHHHHHHHHCCCCCCCHH
VTSAALRQAYPHDAIAFAERTYLGE
HHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA