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The map label for this gene is yfdE [H]

Identifier: 169629849

GI number: 169629849

Start: 2813656

End: 2815308

Strand: Direct

Name: yfdE [H]

Synonym: MAB_2765

Alternate gene names: 169629849

Gene position: 2813656-2815308 (Clockwise)

Preceding gene: 169629847

Following gene: 169629850

Centisome position: 55.53

GC content: 63.04

Gene sequence:

>1653_bases
ATGCCGCTGCCAATCGGCGCACCGGCCCAGAAAAACGAAGGGGTAGGAGTGAAGAACTCTAACCAACTGCAACAGCGGGC
ACTCAAGGCTGTGACCGCGCAGCTACCGATCGATATCGATGGCAGTAACGTCATTGTGGAGGACGGCCTCTCTTACACGC
GCAGCCCGATCAAAGCGCATGACTACGCGACTGGTTTGTTTTCGGCATTCGGGGGCGCCGTTGAGTACTTGGGACGGATG
CGCGGGCTGCCCGCCCAGACGTTGACCGTCAACCGCCGGCTTTCCGGGCTCTCCCTGAACTCTTTGCAACTGACGTTCTC
GAACGGCCGTGCACTCGGGTTCGATGACTACACGACCGGCCCCGACAACGGCATCTACCGCACACGGGACAACCGGTTCT
TCGGGATGATCGGACTGCACCCGAAGCTGCGAGACGGCATCACCGAGTATTTGGGTGCCACCAGCCGTGAAGGCCTGCGG
CGCGCCATTTCCCAGCGCGACGCACAGGATCTGGAGGACTCATTCGCCCAGCGGCGGCTGCCCGGAGGCATCGTCAGAAC
TCCGCAGGAGTGGCTCGATCACCCTCAGGGGAGGGCTTGTGCGGAGCATCCGATGGTGCTGGTGGACCAGCTGAGTAAGG
GAGGCTCCCACCGCCGCCTGGGAAACGCCACGGTGCGTCCGCTGGAGGGCGTCCGGGTTGTCGAACTTGCCAATGTGGTC
GCAGGCCCCACCACCGGCCGGGCTCTGGCCGAGCAGGGCGCCGAGGTCATCAAGCTCGCCTGTGTCGGCGGGCCAGTCAC
CATCGGCATCTGGCTCGACGCCAACTGGGGCAAACGGCAGTTCCGCATGAACATCAAAGGCCCCGCCGGGCAGGCCAAGC
TACGAGAGCTACTCGCCGGTGCAGATGTGTTGCTCAACAGTATGAGCCCAGGGCGGCTTACCGAATTGGGATTGGGCCCG
GAGGCACTGCAACAGATCAATCCGAACCTGATACTCGCTGACTTCTCTTTTGCGCCAAAGAATTCGCCGTGGTTCGACCG
CAAGGGCTTCGAACAGATCGCCCAATCCGTATCGGGCATAGTTTCGGTGAACTCGCAGGACCGCTATGTGGACGATCCGA
CCCATATCTCGGTGCTGATCAACGACTTCTGCTCGGCCTACAACCTGGCCACCGGTATCGTCTCCGCACTCGCCGCACGG
GAAGAGCAGGGCGGATTCTGGTACGTCGAACACTCACTGCTGCGGAACGCCACCGAAGCGGTGCGCTACGTCCGCCCGAT
GAACGACGAGCGGTACGCGCCGGTGTCGATCGCCGACCTGCGCCGCTGGGCCATCGATCAGGACACCCCGAACGGTGTCT
TCACGCGCCTGACGCCTCCGGTGACCTTCAGCCACACCCCCTCGAAGGCCTGGCGCCCCACCGGGCTGCCGTTCGGCGGG
GTCGAGGGGCTGTCATGGCAGGACAAGCCAATCGGTTCCGATGACCCACTGGCGACTCCCCATTATCCGTCCAGGATCGT
CGCCGAGGGCCGACTACACGACTTTGTCGAGTGTTACGGCATCGAGGACCGCGGCGATGGAGGCGGCGATGTGAGCTTTT
TCTCCCCTGGGTTGGCGGTTCTCTCCAGAAACCAAGGGCTAGAGGCTATTTGA

Upstream 100 bases:

>100_bases
ATAGGCACGGTCAGCGTCGACATTGCTTTGCTGTCAATTGATTGACCGATGTCGCCGCGCATGCCGCGCCCGCCCTGCCC
CCCAAGTACGCAGTGGTCGG

Downstream 100 bases:

>100_bases
TGCGCATAGTCATTGCCATGACCGGGGCGACCGGCGCGGTTCTCGGGGTTCGACTCCTCGAGAACCTAGCAGCGCGGCCC
GACATCGAAACCCACCTGGT

Product: putative L-carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MPLPIGAPAQKNEGVGVKNSNQLQQRALKAVTAQLPIDIDGSNVIVEDGLSYTRSPIKAHDYATGLFSAFGGAVEYLGRM
RGLPAQTLTVNRRLSGLSLNSLQLTFSNGRALGFDDYTTGPDNGIYRTRDNRFFGMIGLHPKLRDGITEYLGATSREGLR
RAISQRDAQDLEDSFAQRRLPGGIVRTPQEWLDHPQGRACAEHPMVLVDQLSKGGSHRRLGNATVRPLEGVRVVELANVV
AGPTTGRALAEQGAEVIKLACVGGPVTIGIWLDANWGKRQFRMNIKGPAGQAKLRELLAGADVLLNSMSPGRLTELGLGP
EALQQINPNLILADFSFAPKNSPWFDRKGFEQIAQSVSGIVSVNSQDRYVDDPTHISVLINDFCSAYNLATGIVSALAAR
EEQGGFWYVEHSLLRNATEAVRYVRPMNDERYAPVSIADLRRWAIDQDTPNGVFTRLTPPVTFSHTPSKAWRPTGLPFGG
VEGLSWQDKPIGSDDPLATPHYPSRIVAEGRLHDFVECYGIEDRGDGGGDVSFFSPGLAVLSRNQGLEAI

Sequences:

>Translated_550_residues
MPLPIGAPAQKNEGVGVKNSNQLQQRALKAVTAQLPIDIDGSNVIVEDGLSYTRSPIKAHDYATGLFSAFGGAVEYLGRM
RGLPAQTLTVNRRLSGLSLNSLQLTFSNGRALGFDDYTTGPDNGIYRTRDNRFFGMIGLHPKLRDGITEYLGATSREGLR
RAISQRDAQDLEDSFAQRRLPGGIVRTPQEWLDHPQGRACAEHPMVLVDQLSKGGSHRRLGNATVRPLEGVRVVELANVV
AGPTTGRALAEQGAEVIKLACVGGPVTIGIWLDANWGKRQFRMNIKGPAGQAKLRELLAGADVLLNSMSPGRLTELGLGP
EALQQINPNLILADFSFAPKNSPWFDRKGFEQIAQSVSGIVSVNSQDRYVDDPTHISVLINDFCSAYNLATGIVSALAAR
EEQGGFWYVEHSLLRNATEAVRYVRPMNDERYAPVSIADLRRWAIDQDTPNGVFTRLTPPVTFSHTPSKAWRPTGLPFGG
VEGLSWQDKPIGSDDPLATPHYPSRIVAEGRLHDFVECYGIEDRGDGGGDVSFFSPGLAVLSRNQGLEAI
>Mature_549_residues
PLPIGAPAQKNEGVGVKNSNQLQQRALKAVTAQLPIDIDGSNVIVEDGLSYTRSPIKAHDYATGLFSAFGGAVEYLGRMR
GLPAQTLTVNRRLSGLSLNSLQLTFSNGRALGFDDYTTGPDNGIYRTRDNRFFGMIGLHPKLRDGITEYLGATSREGLRR
AISQRDAQDLEDSFAQRRLPGGIVRTPQEWLDHPQGRACAEHPMVLVDQLSKGGSHRRLGNATVRPLEGVRVVELANVVA
GPTTGRALAEQGAEVIKLACVGGPVTIGIWLDANWGKRQFRMNIKGPAGQAKLRELLAGADVLLNSMSPGRLTELGLGPE
ALQQINPNLILADFSFAPKNSPWFDRKGFEQIAQSVSGIVSVNSQDRYVDDPTHISVLINDFCSAYNLATGIVSALAARE
EQGGFWYVEHSLLRNATEAVRYVRPMNDERYAPVSIADLRRWAIDQDTPNGVFTRLTPPVTFSHTPSKAWRPTGLPFGGV
EGLSWQDKPIGSDDPLATPHYPSRIVAEGRLHDFVECYGIEDRGDGGGDVSFFSPGLAVLSRNQGLEAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863124, Length=212, Percent_Identity=28.3018867924528, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI300863128, Length=212, Percent_Identity=28.3018867924528, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI300863126, Length=152, Percent_Identity=33.5526315789474, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI266458397, Length=178, Percent_Identity=32.5842696629214, Blast_Score=73, Evalue=9e-13,
Organism=Homo sapiens, GI42794625, Length=178, Percent_Identity=32.5842696629214, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI266456254, Length=178, Percent_Identity=32.5842696629214, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI266458393, Length=178, Percent_Identity=32.5842696629214, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI42822893, Length=109, Percent_Identity=38.5321100917431, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI266458395, Length=109, Percent_Identity=38.5321100917431, Blast_Score=67, Evalue=6e-11,
Organism=Escherichia coli, GI87082093, Length=193, Percent_Identity=32.1243523316062, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788717, Length=150, Percent_Identity=31.3333333333333, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=209, Percent_Identity=29.6650717703349, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24648431, Length=188, Percent_Identity=30.8510638297872, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24585488, Length=199, Percent_Identity=27.6381909547739, Blast_Score=78, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 59784; Mature: 59653

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLPIGAPAQKNEGVGVKNSNQLQQRALKAVTAQLPIDIDGSNVIVEDGLSYTRSPIKAH
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCCEEEEECCCCHHCCCCCHH
DYATGLFSAFGGAVEYLGRMRGLPAQTLTVNRRLSGLSLNSLQLTFSNGRALGFDDYTTG
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEECEEEEEECCCCEECCCCCCCC
PDNGIYRTRDNRFFGMIGLHPKLRDGITEYLGATSREGLRRAISQRDAQDLEDSFAQRRL
CCCCEEEECCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCC
PGGIVRTPQEWLDHPQGRACAEHPMVLVDQLSKGGSHRRLGNATVRPLEGVRVVELANVV
CCCCCCCCHHHHCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHH
AGPTTGRALAEQGAEVIKLACVGGPVTIGIWLDANWGKRQFRMNIKGPAGQAKLRELLAG
CCCCCCHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHH
ADVLLNSMSPGRLTELGLGPEALQQINPNLILADFSFAPKNSPWFDRKGFEQIAQSVSGI
HHHHHHCCCCCCEEECCCCHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHE
VSVNSQDRYVDDPTHISVLINDFCSAYNLATGIVSALAAREEQGGFWYVEHSLLRNATEA
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
VRYVRPMNDERYAPVSIADLRRWAIDQDTPNGVFTRLTPPVTFSHTPSKAWRPTGLPFGG
HHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCC
VEGLSWQDKPIGSDDPLATPHYPSRIVAEGRLHDFVECYGIEDRGDGGGDVSFFSPGLAV
CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCEECCCHHH
LSRNQGLEAI
HCCCCCCCCC
>Mature Secondary Structure 
PLPIGAPAQKNEGVGVKNSNQLQQRALKAVTAQLPIDIDGSNVIVEDGLSYTRSPIKAH
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCCEEEEECCCCHHCCCCCHH
DYATGLFSAFGGAVEYLGRMRGLPAQTLTVNRRLSGLSLNSLQLTFSNGRALGFDDYTTG
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEECEEEEEECCCCEECCCCCCCC
PDNGIYRTRDNRFFGMIGLHPKLRDGITEYLGATSREGLRRAISQRDAQDLEDSFAQRRL
CCCCEEEECCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCC
PGGIVRTPQEWLDHPQGRACAEHPMVLVDQLSKGGSHRRLGNATVRPLEGVRVVELANVV
CCCCCCCCHHHHCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHH
AGPTTGRALAEQGAEVIKLACVGGPVTIGIWLDANWGKRQFRMNIKGPAGQAKLRELLAG
CCCCCCHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHH
ADVLLNSMSPGRLTELGLGPEALQQINPNLILADFSFAPKNSPWFDRKGFEQIAQSVSGI
HHHHHHCCCCCCEEECCCCHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHE
VSVNSQDRYVDDPTHISVLINDFCSAYNLATGIVSALAAREEQGGFWYVEHSLLRNATEA
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
VRYVRPMNDERYAPVSIADLRRWAIDQDTPNGVFTRLTPPVTFSHTPSKAWRPTGLPFGG
HHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCC
VEGLSWQDKPIGSDDPLATPHYPSRIVAEGRLHDFVECYGIEDRGDGGGDVSFFSPGLAV
CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCEECCCHHH
LSRNQGLEAI
HCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]