Click here to switch to the map view.

The map label for this gene is rarD [H]

Identifier: 169629783

GI number: 169629783

Start: 2743476

End: 2744444

Strand: Reverse

Name: rarD [H]

Synonym: MAB_2698c

Alternate gene names: 169629783

Gene position: 2744444-2743476 (Counterclockwise)

Preceding gene: 169629784

Following gene: 169629782

Centisome position: 54.16

GC content: 62.95

Gene sequence:

>969_bases
ATGAGCGGGCTCCCCGCCATTCCCGAACAGAACCGCAGCCCGAAATCCGGGTATCTGTTCGGCGCGGCCGCATACCTGAT
GTGGGGATTGTTCCCGGCGTTCTTCCCGCTGCTGGAACCTGCGGGTGCGCTGGAGATTCTGGCGCATCGCATGATCTGGA
CACTGCTGCTGATGGCGGTCGTCGTCGCGGTCTCTCGACGTCTGCGCGACCTGGTCGCCATGGGGCTGCGCAACTGGGGG
CTGCTCATCGGCGCTTCGCTGCTCATCGCGCTGAACTGGGGCGTGTACATCTATGCCGTCAACTCCGGGCATGTACTCGA
CGCCGCCCTGGGGTATTACATCAATCCGTTGGTGACGGTGTTGTTGGGAGTGGTGCTCTTTCGGGAACCCCTCAGCCGGT
GGCAGCTATTGGCACTGGTGTTGGCGTTCACCGCGGTCGCGGTACTGACGATCAGCGTGGGCCGGTTGCCGGTCATCACG
TTGATTCTGGCCGCCTCGTTCGCCGGTTACGGCGCCATCAAGAAGACGATCACCGTTGACCCGCGGGTAAGCCTGACCGC
CGAAGGGATCGTCGCCGCGCCGTTCGCGGGCGCCTACCTGGTATTCGTGGGCGTGTCCGGTCAGCAACACTTTCTGGGCT
ACACCCACGGACATACCGCGCTGATGGTGCTCAGCGGTGTGGTGACGGCTCTGCCTCTGTTGTTATTCGGTGCTGCGGCA
CAACGTATTCCGTTGGTCACCCTGGGGCTGCTGCAGTATGTGACGCCGACGTTGCAGATGCTCTGGGGTGTACTGGTCAA
ACACGAGGCAATGCCGCCGGAGCGCTGGGTGGGCTTTGTCTTGATCTGGGCTGCGCTGGTGATATTCACGGCCGATACCG
TGCGCAGTGCGCTGATCTTGCCGCGTCAGTCGGGCCGACCGGCTACGGTTTCGCCCATCGACATGGTGTCGGTCAAGGGG
AGGGATTGA

Upstream 100 bases:

>100_bases
ATGCCAAATCGTTGGCCTTTGCCCATCCGGGGGACGGTCGCTGGATTGAGATCACCAGTGAGTACCCCGAGGATTTGGCC
CACGCGCTCGACGTCCTGCG

Downstream 100 bases:

>100_bases
GCGTTGCGGCACATGATCCTCGGGGCGGCGGTCGTGGTGGCCACGTTGTCCGGCTGTGCTTCGTCCGGCGGGCAGCAGGA
CGCAGAAGCCAGCATTGCGG

Product: putative RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSGLPAIPEQNRSPKSGYLFGAAAYLMWGLFPAFFPLLEPAGALEILAHRMIWTLLLMAVVVAVSRRLRDLVAMGLRNWG
LLIGASLLIALNWGVYIYAVNSGHVLDAALGYYINPLVTVLLGVVLFREPLSRWQLLALVLAFTAVAVLTISVGRLPVIT
LILAASFAGYGAIKKTITVDPRVSLTAEGIVAAPFAGAYLVFVGVSGQQHFLGYTHGHTALMVLSGVVTALPLLLFGAAA
QRIPLVTLGLLQYVTPTLQMLWGVLVKHEAMPPERWVGFVLIWAALVIFTADTVRSALILPRQSGRPATVSPIDMVSVKG
RD

Sequences:

>Translated_322_residues
MSGLPAIPEQNRSPKSGYLFGAAAYLMWGLFPAFFPLLEPAGALEILAHRMIWTLLLMAVVVAVSRRLRDLVAMGLRNWG
LLIGASLLIALNWGVYIYAVNSGHVLDAALGYYINPLVTVLLGVVLFREPLSRWQLLALVLAFTAVAVLTISVGRLPVIT
LILAASFAGYGAIKKTITVDPRVSLTAEGIVAAPFAGAYLVFVGVSGQQHFLGYTHGHTALMVLSGVVTALPLLLFGAAA
QRIPLVTLGLLQYVTPTLQMLWGVLVKHEAMPPERWVGFVLIWAALVIFTADTVRSALILPRQSGRPATVSPIDMVSVKG
RD
>Mature_321_residues
SGLPAIPEQNRSPKSGYLFGAAAYLMWGLFPAFFPLLEPAGALEILAHRMIWTLLLMAVVVAVSRRLRDLVAMGLRNWGL
LIGASLLIALNWGVYIYAVNSGHVLDAALGYYINPLVTVLLGVVLFREPLSRWQLLALVLAFTAVAVLTISVGRLPVITL
ILAASFAGYGAIKKTITVDPRVSLTAEGIVAAPFAGAYLVFVGVSGQQHFLGYTHGHTALMVLSGVVTALPLLLFGAAAQ
RIPLVTLGLLQYVTPTLQMLWGVLVKHEAMPPERWVGFVLIWAALVIFTADTVRSALILPRQSGRPATVSPIDMVSVKGR
D

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=288, Percent_Identity=38.5416666666667, Blast_Score=188, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34600; Mature: 34469

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLPAIPEQNRSPKSGYLFGAAAYLMWGLFPAFFPLLEPAGALEILAHRMIWTLLLMAV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VVAVSRRLRDLVAMGLRNWGLLIGASLLIALNWGVYIYAVNSGHVLDAALGYYINPLVTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCHHHHHHHHHHHHHHHH
LLGVVLFREPLSRWQLLALVLAFTAVAVLTISVGRLPVITLILAASFAGYGAIKKTITVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHEEEEC
PRVSLTAEGIVAAPFAGAYLVFVGVSGQQHFLGYTHGHTALMVLSGVVTALPLLLFGAAA
CCCEEEECCEEECCCCCEEEEEEECCCCCHHCEECCCHHHHHHHHHHHHHHHHHHHHHHH
QRIPLVTLGLLQYVTPTLQMLWGVLVKHEAMPPERWVGFVLIWAALVIFTADTVRSALIL
HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRQSGRPATVSPIDMVSVKGRD
CCCCCCCCCCCCCCEEECCCCC
>Mature Secondary Structure 
SGLPAIPEQNRSPKSGYLFGAAAYLMWGLFPAFFPLLEPAGALEILAHRMIWTLLLMAV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VVAVSRRLRDLVAMGLRNWGLLIGASLLIALNWGVYIYAVNSGHVLDAALGYYINPLVTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCHHHHHHHHHHHHHHHH
LLGVVLFREPLSRWQLLALVLAFTAVAVLTISVGRLPVITLILAASFAGYGAIKKTITVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHEEEEC
PRVSLTAEGIVAAPFAGAYLVFVGVSGQQHFLGYTHGHTALMVLSGVVTALPLLLFGAAA
CCCEEEECCEEECCCCCEEEEEEECCCCCHHCEECCCHHHHHHHHHHHHHHHHHHHHHHH
QRIPLVTLGLLQYVTPTLQMLWGVLVKHEAMPPERWVGFVLIWAALVIFTADTVRSALIL
HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRQSGRPATVSPIDMVSVKGRD
CCCCCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA