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The map label for this gene is ybdK [C]

Identifier: 169629644

GI number: 169629644

Start: 2603446

End: 2604546

Strand: Direct

Name: ybdK [C]

Synonym: MAB_2558

Alternate gene names: 169629644

Gene position: 2603446-2604546 (Clockwise)

Preceding gene: 169629641

Following gene: 169629646

Centisome position: 51.38

GC content: 63.58

Gene sequence:

>1101_bases
ATGGATGGTCACCCGACCGTGGGGGTAGAGGAGGAGTTCCTTCTCGTTGATCGGAACACCGGCGAGCCCGTCGGCCGCAA
TAGAGCCGTCGCGCAGGTTGCCTCGACGCATGGTGTCGATTTGCAGCTCGAGCTCACCAGTTGTCAGGTCGAGACCACCA
CCGCGGTGATGTGCACCAGCAGCGCGTTACGTACGGAGCTGATCCGGCTGCGCGGTATCGCATCAGCAGCAGCAGCGAGT
CAACGAGCACACCTACTGGCCGTGGCTTTGCCGCCGACTGTGCCGCATGCCTTTCCGGTGACGCCCACCGCCCGCTACCG
CCGGATGGCTGACGAGTTCGGCATGCTCGCTCACGAACAAGGCATCTGCGGATGCCATGTGCATGTGGCAGTGCCCAGCC
GCGAGTCTGCCATTGACGTGAGTAACCGGTTACGGCCGACGCTGCATCTTTTCCTTGCCTTGACTGCCAATTCGGCGGTC
TATCGCAAGGCCGACAGCGGTTATGCGAGCTATCGCAACATGCTGTGGACCCGCTGGCCAAGCTCTGGACCACCGCCGTA
CTTTGACTCGGTCGACCATTACGACACCACTGTCCGGGAGCTGAGCCGCAGTGGCGCCGTGCTCGATGACGGCATGGTCT
ATTGGGATGTGCGTCCGTCGGCCAACTTCCCGACGGTGGAAGTCCGTGTTGCCGACGTTCCCGCAACTGTGGCCGAGACG
GTGCTGCTGGCCACACTCGTGCGGGCTGCGGTGATGAGCGCCCTGGAAGCACAGAAGCGCGGCGACCCGGCGCCGCGGCT
TGAGGACTGTGTGCTGCGCGCTGCCCACTGGAGATCCGCACGCGATGGGCTGGACGGCATGGCAGTGGACCTGGTTGGTA
GTTCCTCGACGGCGCCGGCGCGGACTCTGCTGAGCCGGCTCATCGATCACCTTCGGCCGGCTCTGGAATCGCTGGGCGAC
TACGACATGGCGCGCACGGAGCTGGCGCGCGTAGTCGCGCAGGGCAACGGCGCTATGAGACAACGACGCACATGGTGCAC
GTCCGGGAACGTCAAGGACGTGATCTCTGAAATAGCAACAGCAACAACAGATTTCAACTAG

Upstream 100 bases:

>100_bases
GGTTGCAACCAGGTCCATTTCTGGTGGTATCGAACGTCGAGGCGCACGCAAACTGCGGCACTGGGAGTTTAGTGTCTCGT
AAGTCGGGCAATCTTCGGCC

Downstream 100 bases:

>100_bases
GACTAGAACAATCCGGGTTAGTCAACCGCGTGCTGAAATCCGCCCCAGCGGATCAGTTCGTGGCGTTGAGGACCTTGATC
GCGAAGACAAGGGTGTCGCC

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MDGHPTVGVEEEFLLVDRNTGEPVGRNRAVAQVASTHGVDLQLELTSCQVETTTAVMCTSSALRTELIRLRGIASAAAAS
QRAHLLAVALPPTVPHAFPVTPTARYRRMADEFGMLAHEQGICGCHVHVAVPSRESAIDVSNRLRPTLHLFLALTANSAV
YRKADSGYASYRNMLWTRWPSSGPPPYFDSVDHYDTTVRELSRSGAVLDDGMVYWDVRPSANFPTVEVRVADVPATVAET
VLLATLVRAAVMSALEAQKRGDPAPRLEDCVLRAAHWRSARDGLDGMAVDLVGSSSTAPARTLLSRLIDHLRPALESLGD
YDMARTELARVVAQGNGAMRQRRTWCTSGNVKDVISEIATATTDFN

Sequences:

>Translated_366_residues
MDGHPTVGVEEEFLLVDRNTGEPVGRNRAVAQVASTHGVDLQLELTSCQVETTTAVMCTSSALRTELIRLRGIASAAAAS
QRAHLLAVALPPTVPHAFPVTPTARYRRMADEFGMLAHEQGICGCHVHVAVPSRESAIDVSNRLRPTLHLFLALTANSAV
YRKADSGYASYRNMLWTRWPSSGPPPYFDSVDHYDTTVRELSRSGAVLDDGMVYWDVRPSANFPTVEVRVADVPATVAET
VLLATLVRAAVMSALEAQKRGDPAPRLEDCVLRAAHWRSARDGLDGMAVDLVGSSSTAPARTLLSRLIDHLRPALESLGD
YDMARTELARVVAQGNGAMRQRRTWCTSGNVKDVISEIATATTDFN
>Mature_366_residues
MDGHPTVGVEEEFLLVDRNTGEPVGRNRAVAQVASTHGVDLQLELTSCQVETTTAVMCTSSALRTELIRLRGIASAAAAS
QRAHLLAVALPPTVPHAFPVTPTARYRRMADEFGMLAHEQGICGCHVHVAVPSRESAIDVSNRLRPTLHLFLALTANSAV
YRKADSGYASYRNMLWTRWPSSGPPPYFDSVDHYDTTVRELSRSGAVLDDGMVYWDVRPSANFPTVEVRVADVPATVAET
VLLATLVRAAVMSALEAQKRGDPAPRLEDCVLRAAHWRSARDGLDGMAVDLVGSSSTAPARTLLSRLIDHLRPALESLGD
YDMARTELARVVAQGNGAMRQRRTWCTSGNVKDVISEIATATTDFN

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=259, Percent_Identity=27.4131274131274, Blast_Score=98, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 39698; Mature: 39698

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGHPTVGVEEEFLLVDRNTGEPVGRNRAVAQVASTHGVDLQLELTSCQVETTTAVMCTS
CCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEHEEEEHHH
SALRTELIRLRGIASAAAASQRAHLLAVALPPTVPHAFPVTPTARYRRMADEFGMLAHEQ
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHCC
GICGCHVHVAVPSRESAIDVSNRLRPTLHLFLALTANSAVYRKADSGYASYRNMLWTRWP
CCCEEEEEEEECCCCCHHCHHHHCCHHHEEEEEEECCCCEEECCCCCHHHHHHHEEEECC
SSGPPPYFDSVDHYDTTVRELSRSGAVLDDGMVYWDVRPSANFPTVEVRVADVPATVAET
CCCCCCCCCCCCHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCEEEEEEECCCHHHHHH
VLLATLVRAAVMSALEAQKRGDPAPRLEDCVLRAAHWRSARDGLDGMAVDLVGSSSTAPA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
RTLLSRLIDHLRPALESLGDYDMARTELARVVAQGNGAMRQRRTWCTSGNVKDVISEIAT
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHH
ATTDFN
HHCCCC
>Mature Secondary Structure
MDGHPTVGVEEEFLLVDRNTGEPVGRNRAVAQVASTHGVDLQLELTSCQVETTTAVMCTS
CCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEHEEEEHHH
SALRTELIRLRGIASAAAASQRAHLLAVALPPTVPHAFPVTPTARYRRMADEFGMLAHEQ
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHCC
GICGCHVHVAVPSRESAIDVSNRLRPTLHLFLALTANSAVYRKADSGYASYRNMLWTRWP
CCCEEEEEEEECCCCCHHCHHHHCCHHHEEEEEEECCCCEEECCCCCHHHHHHHEEEECC
SSGPPPYFDSVDHYDTTVRELSRSGAVLDDGMVYWDVRPSANFPTVEVRVADVPATVAET
CCCCCCCCCCCCHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCEEEEEEECCCHHHHHH
VLLATLVRAAVMSALEAQKRGDPAPRLEDCVLRAAHWRSARDGLDGMAVDLVGSSSTAPA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
RTLLSRLIDHLRPALESLGDYDMARTELARVVAQGNGAMRQRRTWCTSGNVKDVISEIAT
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHH
ATTDFN
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA