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The map label for this gene is intR [C]

Identifier: 169628905

GI number: 169628905

Start: 1816245

End: 1817414

Strand: Reverse

Name: intR [C]

Synonym: MAB_1816c

Alternate gene names: 169628905

Gene position: 1817414-1816245 (Counterclockwise)

Preceding gene: 169628906

Following gene: 169628901

Centisome position: 35.87

GC content: 61.97

Gene sequence:

>1170_bases
GTGGCAGGACGACCTCCGCTGCGAATTGGGCAGCACGGCAAGATCAGCCGACAGTATGTCGGCGGCGGCGTTTGGGTAGC
GCGATGCCGCTATCGAGACAGTGACGGGGTCACACGAATCGTTGAACGACGCGGTCCGGTCGATGACTTCGACAAGCACG
GCAAGCTAGCCGAGGATGCGCTCATCGAAGCACTGTCCGACCGTCGGCTTCCAGCTGATACTGACACCATCGGCTACGAC
ACGCTCGTGATGGCGCTGGTCGATCAACACATCGGACGGTTGTCAGATGACGGCCGGTCCCCCGCCACTGTCGCTACGTA
CAAGTTCGCATCGGACAAACTCCGAAACTTCCTCGGCGGCGTACGAGTCAGCGAAGCTCACGCCGCGAGGATGGACGCGG
CCCTACGGTCCATGCGTACCGCCCACGGCACAACGATGGCCAGGCAAGCGAAAACAATCCTGCAGGGTGGCCTCCAGCTT
GCGGTCATGGCCAACGTGATCCCAGCCAATCCCGTACGTGACGTGCAATCGCTGCGAAGCAAGACACGGCCAAAGGGCGC
AACAGCCCTGAGCGCTGATCAGTTGCGAACGCTACTCGCTGAGATCCGAGCATCCGAATACTGCGCAGGCAACGACCTCG
CTGACCCACTCATCATTCTGATGGCGACCGGGCTCCGCCGATCCGAGTTATTGGCGTTGAGGTGGTCGGACTTCGACGCC
AATGCAGGCACCCTCACAGTGACGGGCAAGTTGGTCCGTGCAACTGGTGCGGGTCTGCAGCGGATCGATGAGGCGAAGAC
GGCAGCAGGCATGCGCACGGTGGCGCTGCCTTCGTTTGCCGTCACTGCGCTTCGTCATCGGCAAGGGCGCGATTACGTCG
GTCAGCAGCTGATGATCTTCCCGTCCACGGCGGGCACATGGCGCGACCCGAACAACTTCGGGAAACAGTGGCGTGCCGTA
CGCGACGACCTGGGCGTCCCCGGGGTCACTACCCACTCTTTCCGCAAGACGATGGCCACCCTGATCGATGACAACGGGTT
GTCTGCACGGGTCGGAGCCGATCAGCTCGGACACGCGAAAGTCAGCATGACGCAGGACCGCTACATGGCCAGGGGCAAGG
TGCATCACGAGGTCGCAGACCTGCTAGACGCCACCATAAGCGATGAATAA

Upstream 100 bases:

>100_bases
GCTACCGCTTGTCCGACGTTGTGGCATGGGAAAATTCCCTGTTGTCGGACGCTGACGCCGTGCTCGACGCACGCTAGCAC
CACGAACGGAAGAAACACCT

Downstream 100 bases:

>100_bases
ACGATGGATTGGACCCTACAAACGCCAAAAACAGCCGATGAAGTGGGGCGGGCGGGGCTCGAACCCGCGACCAATGGATT
ATGAGTCCACGGCTCTAACC

Product: Phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MAGRPPLRIGQHGKISRQYVGGGVWVARCRYRDSDGVTRIVERRGPVDDFDKHGKLAEDALIEALSDRRLPADTDTIGYD
TLVMALVDQHIGRLSDDGRSPATVATYKFASDKLRNFLGGVRVSEAHAARMDAALRSMRTAHGTTMARQAKTILQGGLQL
AVMANVIPANPVRDVQSLRSKTRPKGATALSADQLRTLLAEIRASEYCAGNDLADPLIILMATGLRRSELLALRWSDFDA
NAGTLTVTGKLVRATGAGLQRIDEAKTAAGMRTVALPSFAVTALRHRQGRDYVGQQLMIFPSTAGTWRDPNNFGKQWRAV
RDDLGVPGVTTHSFRKTMATLIDDNGLSARVGADQLGHAKVSMTQDRYMARGKVHHEVADLLDATISDE

Sequences:

>Translated_389_residues
MAGRPPLRIGQHGKISRQYVGGGVWVARCRYRDSDGVTRIVERRGPVDDFDKHGKLAEDALIEALSDRRLPADTDTIGYD
TLVMALVDQHIGRLSDDGRSPATVATYKFASDKLRNFLGGVRVSEAHAARMDAALRSMRTAHGTTMARQAKTILQGGLQL
AVMANVIPANPVRDVQSLRSKTRPKGATALSADQLRTLLAEIRASEYCAGNDLADPLIILMATGLRRSELLALRWSDFDA
NAGTLTVTGKLVRATGAGLQRIDEAKTAAGMRTVALPSFAVTALRHRQGRDYVGQQLMIFPSTAGTWRDPNNFGKQWRAV
RDDLGVPGVTTHSFRKTMATLIDDNGLSARVGADQLGHAKVSMTQDRYMARGKVHHEVADLLDATISDE
>Mature_388_residues
AGRPPLRIGQHGKISRQYVGGGVWVARCRYRDSDGVTRIVERRGPVDDFDKHGKLAEDALIEALSDRRLPADTDTIGYDT
LVMALVDQHIGRLSDDGRSPATVATYKFASDKLRNFLGGVRVSEAHAARMDAALRSMRTAHGTTMARQAKTILQGGLQLA
VMANVIPANPVRDVQSLRSKTRPKGATALSADQLRTLLAEIRASEYCAGNDLADPLIILMATGLRRSELLALRWSDFDAN
AGTLTVTGKLVRATGAGLQRIDEAKTAAGMRTVALPSFAVTALRHRQGRDYVGQQLMIFPSTAGTWRDPNNFGKQWRAVR
DDLGVPGVTTHSFRKTMATLIDDNGLSARVGADQLGHAKVSMTQDRYMARGKVHHEVADLLDATISDE

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42291; Mature: 42160

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRPPLRIGQHGKISRQYVGGGVWVARCRYRDSDGVTRIVERRGPVDDFDKHGKLAEDA
CCCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHCCCHHHHH
LIEALSDRRLPADTDTIGYDTLVMALVDQHIGRLSDDGRSPATVATYKFASDKLRNFLGG
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHCC
VRVSEAHAARMDAALRSMRTAHGTTMARQAKTILQGGLQLAVMANVIPANPVRDVQSLRS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCCHHHHHHHHHH
KTRPKGATALSADQLRTLLAEIRASEYCAGNDLADPLIILMATGLRRSELLALRWSDFDA
HCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHEEEEEECCCCC
NAGTLTVTGKLVRATGAGLQRIDEAKTAAGMRTVALPSFAVTALRHRQGRDYVGQQLMIF
CCCEEEEECHHHHHHCHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHCCCHHHCCEEEEE
PSTAGTWRDPNNFGKQWRAVRDDLGVPGVTTHSFRKTMATLIDDNGLSARVGADQLGHAK
ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHCCCE
VSMTQDRYMARGKVHHEVADLLDATISDE
EEEHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AGRPPLRIGQHGKISRQYVGGGVWVARCRYRDSDGVTRIVERRGPVDDFDKHGKLAEDA
CCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCCCCHHHHHHHCCCCCCHHHCCCHHHHH
LIEALSDRRLPADTDTIGYDTLVMALVDQHIGRLSDDGRSPATVATYKFASDKLRNFLGG
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHCC
VRVSEAHAARMDAALRSMRTAHGTTMARQAKTILQGGLQLAVMANVIPANPVRDVQSLRS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCCHHHHHHHHHH
KTRPKGATALSADQLRTLLAEIRASEYCAGNDLADPLIILMATGLRRSELLALRWSDFDA
HCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHEEEEEECCCCC
NAGTLTVTGKLVRATGAGLQRIDEAKTAAGMRTVALPSFAVTALRHRQGRDYVGQQLMIF
CCCEEEEECHHHHHHCHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHCCCHHHCCEEEEE
PSTAGTWRDPNNFGKQWRAVRDDLGVPGVTTHSFRKTMATLIDDNGLSARVGADQLGHAK
ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHCCCE
VSMTQDRYMARGKVHHEVADLLDATISDE
EEEHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]