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The map label for this gene is yhgF [C]

Identifier: 169628639

GI number: 169628639

Start: 1571595

End: 1573958

Strand: Reverse

Name: yhgF [C]

Synonym: MAB_1549c

Alternate gene names: 169628639

Gene position: 1573958-1571595 (Counterclockwise)

Preceding gene: 169628641

Following gene: 169628638

Centisome position: 31.06

GC content: 66.12

Gene sequence:

>2364_bases
GTGACTCAGAGCGTGACCGTGAAATCTGTAAACGCCCGCCTCGCTGCGGAACTGGCTGTGACCGAGGCCCAGGTCGCAGC
CGCCGTGCGGCTGCTTGACGAGGGCGCGACGGTCCCGTTCATCGCGCGTTATCGCAAAGAAGTCACCGGCAGCCTGGACG
ACGGCCAGTTGCGTGAACTGGAAGAACGGCTGCGCTACCTGCGAGAACTCGACGAGCGCCGTGCCGCGGTGCTGTCCTCT
ATCGAGGAGCAGGGCAAGCTGACCGACGAACTGAAGGCCGCGCTGATCTCGGCCGACACCAAGGCGCGAGTCGAGGACAT
CTACCTGCCGTACAAACCCAAGCGGCGCACCAAGGCGCAGATCGCGCGCGAAGCCGGACTGGAACCGCTGGCCGACCGTC
TGCTGGCCGACCCGAACCTGGTGCCCGATGTGGTGGCAGCCGAGTTCCTCACCGAGGGCGTCGCCGATGCCAACGCCGCC
CTGGACGGTGCCCGCCACATTCTCATCGAACGGGCGGCCGAGGACGCCGAGCTGGTGGGCGCCACCCGCACCAAGTTCTG
GGCGGAAGGTGCGTTGCGGACGGCCCCATGGTCCGAGGACGCGGCGAAAACCGAAGCGGCACAGAAATACCGCGACTACT
TTGAGTTCTCCGAACCCTTGGAAACCATGCCCTCACACCGGGTACTTGCCGTCATGCGCGGTGAGAAGGAACAGGTTCTG
TCCCTCAACTTCGACGGCGGCGATGACGCACCGTACGAGCACATGGTTGCGCAGTCACTTGGCGTAAACCTGACCGCCAA
CACCCCGGCGACGCCGTGGTTAGCCAGCACCGTCCGCGTCGCCTGGCGCGCCAAGCTCATGTTCTCCGCATCCGTCGACG
CCCGGCTCAAGCTGCGCCAACGCGCCGAGGAAGACGCCGTCGGGGTGTTCGCGCGCAACCTCAAGGATCTGCTACTGGCC
GCGCCCGCGGGCACCCGCGCCACCCTGGGCCTTGACCCCGGCTTCCGCACCGGAGTCAAGGTCGCGGTCGTGGACGGCAC
CGGCAAGGTGCTCGACACCTGCGCGATCTACCCCCATCAGCCGCAGAAGAAGTGGGATGAGGCCAAGGCCACCCTGGCGG
CGTTCATCGCCCGCCACAATGTCGAGCTGATCGCCGTCGGCAACGGGACGGCATCACGCGAAACTGATGCACTGGCAGCA
GAACTCATCGCCGATATCAAGGCCGCGGGCGCTAAGGCACCCACCAAGGCGATGGTCAGCGAGGCCGGCGCATCGGTCTA
CTCGGCCTCTGCCTACGCCGCACACGAGCTTCCCGACCTCGATGTGACCCTGCGAGGCGCGGTCTCGATCGCGCGGCGTC
TGCAAGACCCGTTGGCCGAGCTGGTGAAGATCGAACCCAAGTCCATCGGTGTCGGTCAATACCAGCACGATGTCACCCCC
GGCACCCTGGCGCGCAGCCTCAATGCCGTCGTCGAGGATGCCGTGAACGCGGTGGGTGTGGACCTGAACACGGCCTCGGT
GCCACTGCTCGCACGCGTGTCCGGGGTGACCGAGTCCTTGGCCGAATCCATCGTCGCCCACCGCGAGAAGGTGGGGGCAT
TCCGTAGCCGCAAGGGACTACTTGAGGTGCCCCGGCTGGGCCCCAAGGCCTTTGAGCAATGCGCCGGATTCCTGCGTATT
CGCGGTGGTGACGACCCGCTGGACGCGTCCGGAGTGCACCCCGAGTCGTACCCGGTGGTGCGCAAAATCCTGGACCGCTC
GGGCGTGACCCTGGCCGAGCTGATCGGTAACGAACGGTCACTGCGCTCGCTCAAGCCCGCCGACTTCGCCGACGACCGGT
TCGGAATACCCACCGTCACAGACATTCTCGGCGAGTTGGAGAAGCCGGGGCGCGACCCCCGTCCCGCATTCACCACGGCA
ACGTTCGCTGCCGGAGTCGAAAAGGTGTCGGACCTGAAGGCCGGCATGGTGCTGGAAGGGGTCGTGACAAATGTGGCCGC
CTTCGGCGCGTTTGTTGACGTCGGTGTGCATCAGGACGGCCTCGTGCACGTGTCGGCGATGTCGGATCGGTATGTCTCCG
ACCCCCACGAGGTGGTCAAGTCCGGCCAGGTGGTGCGGGTCAAGGTCACCGAGGTCGACATTCCACGTCAGCGTATCGGC
CTGACCCTGCGACTCAACGACGATCCGCAACAGGGCAAGCGTTCTGAGCGTTCCAGCGCTCCCCGTCGTGACGACAGGAA
CCGCGACGACCGGAATCAGGGGCGCCGAAACCAGAACCGCGACAAGAATTCCGGCCGACGGGAGGAGAGCCGCCCGACGG
GTTCGATGGCGGACGCGCTGCGCAACGCAGGTTTCGGACGATAG

Upstream 100 bases:

>100_bases
GTGCTCCGCAACCCGCGACCAGGAAGATCAGAGCCAACATGCTCCAGACACGCACCCGGTGAGCCTAGCTTGTCCCCGAT
ATTGGGTAGGGTCCCTCGGC

Downstream 100 bases:

>100_bases
TCGGGGACGCCAGCTCGGTCATGATCGAACACCGAACACACCTCTCACCTGTCGGTACCCCTGGCTAACCTGGCGGCGTG
CTCACCACCGTCGCCATCCG

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 787; Mature: 786

Protein sequence:

>787_residues
MTQSVTVKSVNARLAAELAVTEAQVAAAVRLLDEGATVPFIARYRKEVTGSLDDGQLRELEERLRYLRELDERRAAVLSS
IEEQGKLTDELKAALISADTKARVEDIYLPYKPKRRTKAQIAREAGLEPLADRLLADPNLVPDVVAAEFLTEGVADANAA
LDGARHILIERAAEDAELVGATRTKFWAEGALRTAPWSEDAAKTEAAQKYRDYFEFSEPLETMPSHRVLAVMRGEKEQVL
SLNFDGGDDAPYEHMVAQSLGVNLTANTPATPWLASTVRVAWRAKLMFSASVDARLKLRQRAEEDAVGVFARNLKDLLLA
APAGTRATLGLDPGFRTGVKVAVVDGTGKVLDTCAIYPHQPQKKWDEAKATLAAFIARHNVELIAVGNGTASRETDALAA
ELIADIKAAGAKAPTKAMVSEAGASVYSASAYAAHELPDLDVTLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVTP
GTLARSLNAVVEDAVNAVGVDLNTASVPLLARVSGVTESLAESIVAHREKVGAFRSRKGLLEVPRLGPKAFEQCAGFLRI
RGGDDPLDASGVHPESYPVVRKILDRSGVTLAELIGNERSLRSLKPADFADDRFGIPTVTDILGELEKPGRDPRPAFTTA
TFAAGVEKVSDLKAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSDRYVSDPHEVVKSGQVVRVKVTEVDIPRQRIG
LTLRLNDDPQQGKRSERSSAPRRDDRNRDDRNQGRRNQNRDKNSGRREESRPTGSMADALRNAGFGR

Sequences:

>Translated_787_residues
MTQSVTVKSVNARLAAELAVTEAQVAAAVRLLDEGATVPFIARYRKEVTGSLDDGQLRELEERLRYLRELDERRAAVLSS
IEEQGKLTDELKAALISADTKARVEDIYLPYKPKRRTKAQIAREAGLEPLADRLLADPNLVPDVVAAEFLTEGVADANAA
LDGARHILIERAAEDAELVGATRTKFWAEGALRTAPWSEDAAKTEAAQKYRDYFEFSEPLETMPSHRVLAVMRGEKEQVL
SLNFDGGDDAPYEHMVAQSLGVNLTANTPATPWLASTVRVAWRAKLMFSASVDARLKLRQRAEEDAVGVFARNLKDLLLA
APAGTRATLGLDPGFRTGVKVAVVDGTGKVLDTCAIYPHQPQKKWDEAKATLAAFIARHNVELIAVGNGTASRETDALAA
ELIADIKAAGAKAPTKAMVSEAGASVYSASAYAAHELPDLDVTLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVTP
GTLARSLNAVVEDAVNAVGVDLNTASVPLLARVSGVTESLAESIVAHREKVGAFRSRKGLLEVPRLGPKAFEQCAGFLRI
RGGDDPLDASGVHPESYPVVRKILDRSGVTLAELIGNERSLRSLKPADFADDRFGIPTVTDILGELEKPGRDPRPAFTTA
TFAAGVEKVSDLKAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSDRYVSDPHEVVKSGQVVRVKVTEVDIPRQRIG
LTLRLNDDPQQGKRSERSSAPRRDDRNRDDRNQGRRNQNRDKNSGRREESRPTGSMADALRNAGFGR
>Mature_786_residues
TQSVTVKSVNARLAAELAVTEAQVAAAVRLLDEGATVPFIARYRKEVTGSLDDGQLRELEERLRYLRELDERRAAVLSSI
EEQGKLTDELKAALISADTKARVEDIYLPYKPKRRTKAQIAREAGLEPLADRLLADPNLVPDVVAAEFLTEGVADANAAL
DGARHILIERAAEDAELVGATRTKFWAEGALRTAPWSEDAAKTEAAQKYRDYFEFSEPLETMPSHRVLAVMRGEKEQVLS
LNFDGGDDAPYEHMVAQSLGVNLTANTPATPWLASTVRVAWRAKLMFSASVDARLKLRQRAEEDAVGVFARNLKDLLLAA
PAGTRATLGLDPGFRTGVKVAVVDGTGKVLDTCAIYPHQPQKKWDEAKATLAAFIARHNVELIAVGNGTASRETDALAAE
LIADIKAAGAKAPTKAMVSEAGASVYSASAYAAHELPDLDVTLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVTPG
TLARSLNAVVEDAVNAVGVDLNTASVPLLARVSGVTESLAESIVAHREKVGAFRSRKGLLEVPRLGPKAFEQCAGFLRIR
GGDDPLDASGVHPESYPVVRKILDRSGVTLAELIGNERSLRSLKPADFADDRFGIPTVTDILGELEKPGRDPRPAFTTAT
FAAGVEKVSDLKAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSDRYVSDPHEVVKSGQVVRVKVTEVDIPRQRIGL
TLRLNDDPQQGKRSERSSAPRRDDRNRDDRNQGRRNQNRDKNSGRREESRPTGSMADALRNAGFGR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=776, Percent_Identity=32.7319587628866, Blast_Score=367, Evalue=1e-101,
Organism=Homo sapiens, GI27597090, Length=741, Percent_Identity=23.6167341430499, Blast_Score=100, Evalue=4e-21,
Organism=Escherichia coli, GI87082262, Length=744, Percent_Identity=59.1397849462366, Blast_Score=840, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17511129, Length=731, Percent_Identity=29.9589603283174, Blast_Score=236, Evalue=2e-62,
Organism=Caenorhabditis elegans, GI17552892, Length=266, Percent_Identity=31.9548872180451, Blast_Score=77, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6320850, Length=136, Percent_Identity=33.0882352941176, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI62484314, Length=767, Percent_Identity=33.5071707953064, Blast_Score=374, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 85063; Mature: 84932

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSVTVKSVNARLAAELAVTEAQVAAAVRLLDEGATVPFIARYRKEVTGSLDDGQLREL
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHH
EERLRYLRELDERRAAVLSSIEEQGKLTDELKAALISADTKARVEDIYLPYKPKRRTKAQ
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHEECCCCCCHHHHHH
IAREAGLEPLADRLLADPNLVPDVVAAEFLTEGVADANAALDGARHILIERAAEDAELVG
HHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
ATRTKFWAEGALRTAPWSEDAAKTEAAQKYRDYFEFSEPLETMPSHRVLAVMRGEKEQVL
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEE
SLNFDGGDDAPYEHMVAQSLGVNLTANTPATPWLASTVRVAWRAKLMFSASVDARLKLRQ
EEECCCCCCCCHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHH
RAEEDAVGVFARNLKDLLLAAPAGTRATLGLDPGFRTGVKVAVVDGTGKVLDTCAIYPHQ
HHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEECCCCCHHHHHCCCCCC
PQKKWDEAKATLAAFIARHNVELIAVGNGTASRETDALAAELIADIKAAGAKAPTKAMVS
CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
EAGASVYSASAYAAHELPDLDVTLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVTP
HHCCHHHHCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
GTLARSLNAVVEDAVNAVGVDLNTASVPLLARVSGVTESLAESIVAHREKVGAFRSRKGL
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LEVPRLGPKAFEQCAGFLRIRGGDDPLDASGVHPESYPVVRKILDRSGVTLAELIGNERS
CCCCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHCCCHH
LRSLKPADFADDRFGIPTVTDILGELEKPGRDPRPAFTTATFAAGVEKVSDLKAGMVLEG
HHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVTNVAAFGAFVDVGVHQDGLVHVSAMSDRYVSDPHEVVKSGQVVRVKVTEVDIPRQRIG
HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEEEEEEECCCHHHCC
LTLRLNDDPQQGKRSERSSAPRRDDRNRDDRNQGRRNQNRDKNSGRREESRPTGSMADAL
EEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
RNAGFGR
HHCCCCC
>Mature Secondary Structure 
TQSVTVKSVNARLAAELAVTEAQVAAAVRLLDEGATVPFIARYRKEVTGSLDDGQLREL
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHH
EERLRYLRELDERRAAVLSSIEEQGKLTDELKAALISADTKARVEDIYLPYKPKRRTKAQ
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHEECCCCCCHHHHHH
IAREAGLEPLADRLLADPNLVPDVVAAEFLTEGVADANAALDGARHILIERAAEDAELVG
HHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
ATRTKFWAEGALRTAPWSEDAAKTEAAQKYRDYFEFSEPLETMPSHRVLAVMRGEKEQVL
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEE
SLNFDGGDDAPYEHMVAQSLGVNLTANTPATPWLASTVRVAWRAKLMFSASVDARLKLRQ
EEECCCCCCCCHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHH
RAEEDAVGVFARNLKDLLLAAPAGTRATLGLDPGFRTGVKVAVVDGTGKVLDTCAIYPHQ
HHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEECCCCCHHHHHCCCCCC
PQKKWDEAKATLAAFIARHNVELIAVGNGTASRETDALAAELIADIKAAGAKAPTKAMVS
CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
EAGASVYSASAYAAHELPDLDVTLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVTP
HHCCHHHHCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
GTLARSLNAVVEDAVNAVGVDLNTASVPLLARVSGVTESLAESIVAHREKVGAFRSRKGL
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LEVPRLGPKAFEQCAGFLRIRGGDDPLDASGVHPESYPVVRKILDRSGVTLAELIGNERS
CCCCCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHCCCHH
LRSLKPADFADDRFGIPTVTDILGELEKPGRDPRPAFTTATFAAGVEKVSDLKAGMVLEG
HHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVTNVAAFGAFVDVGVHQDGLVHVSAMSDRYVSDPHEVVKSGQVVRVKVTEVDIPRQRIG
HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEEEEEEECCCHHHCC
LTLRLNDDPQQGKRSERSSAPRRDDRNRDDRNQGRRNQNRDKNSGRREESRPTGSMADAL
EEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
RNAGFGR
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]