Click here to switch to the map view.

The map label for this gene is orn [H]

Identifier: 169628623

GI number: 169628623

Start: 1553214

End: 1553840

Strand: Reverse

Name: orn [H]

Synonym: MAB_1533c

Alternate gene names: 169628623

Gene position: 1553840-1553214 (Counterclockwise)

Preceding gene: 169628625

Following gene: 169628622

Centisome position: 30.66

GC content: 64.11

Gene sequence:

>627_bases
GTGAGTGCTCCACGCGATGAACTGGTCTGGATCGACTGCGAGATGACGGGGCTCGACCTCGGCTCCGACAAACTGATCGA
GATCGCCGCCCTTGTCACCGACGGTGACCTCAACATCCTCGGCGAGGGTGTTGACGTCGTCATTCACGCCGATGACGCCG
CCCTGGCCGCGATGCCGCCGGTGGTCGCCGATATGCACGCCAAATCGGGGCTCACCAAGGAGGTCCGCACGTCGGTCGTC
ACCCTGCAAGAAGCAGAGGCGATGGTGCTCGACTACATCCGTCAGCACGTGGCGTCGGCCAAGACCGCTCCCCTGGCAGG
TAACTCCATCGCCACCGACCGGGGCTTCATCGCACGTGACATGCCGGAACTCGACGCCTTCCTGCACTACCGGATGATCG
ACGTCAGCTCCATCAAGGAACTGTGCCGCCGCTGGTATCCGCGGATCTACTTCGGCCAACCCGACAAGGGCCTGGCGCAT
CGTGCGCTCGCCGACATCAAGGAGTCGATTCGCGAGCTGCGCTACTACCGCCGCGCGGCCTTCGTCCCCGATCCTGGGCC
CTCTACCAGTGACCTTGTCGCAATCGTGGCCGACCTGGACAACGCGCCGGATACCGATTCGGCCTAA

Upstream 100 bases:

>100_bases
CTCCGTCATCGCCGACGGTGGGGTCGGCGATGGATTGCTCGCGAAATTCCGCGCTGACGTCACACTCGCGGATCGCACGT
ACCGCTACTGTGGTCAGACT

Downstream 100 bases:

>100_bases
GGCGCCCTCACCGGTTAAGATCTTTCACGCCGCTCTGCGCGGCAATGGTGGCTGTAGTTCAGTTGGTAGAGCACCAGGTT
GTGATCCTGGCTGTCGCGGG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MSAPRDELVWIDCEMTGLDLGSDKLIEIAALVTDGDLNILGEGVDVVIHADDAALAAMPPVVADMHAKSGLTKEVRTSVV
TLQEAEAMVLDYIRQHVASAKTAPLAGNSIATDRGFIARDMPELDAFLHYRMIDVSSIKELCRRWYPRIYFGQPDKGLAH
RALADIKESIRELRYYRRAAFVPDPGPSTSDLVAIVADLDNAPDTDSA

Sequences:

>Translated_208_residues
MSAPRDELVWIDCEMTGLDLGSDKLIEIAALVTDGDLNILGEGVDVVIHADDAALAAMPPVVADMHAKSGLTKEVRTSVV
TLQEAEAMVLDYIRQHVASAKTAPLAGNSIATDRGFIARDMPELDAFLHYRMIDVSSIKELCRRWYPRIYFGQPDKGLAH
RALADIKESIRELRYYRRAAFVPDPGPSTSDLVAIVADLDNAPDTDSA
>Mature_207_residues
SAPRDELVWIDCEMTGLDLGSDKLIEIAALVTDGDLNILGEGVDVVIHADDAALAAMPPVVADMHAKSGLTKEVRTSVVT
LQEAEAMVLDYIRQHVASAKTAPLAGNSIATDRGFIARDMPELDAFLHYRMIDVSSIKELCRRWYPRIYFGQPDKGLAHR
ALADIKESIRELRYYRRAAFVPDPGPSTSDLVAIVADLDNAPDTDSA

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=174, Percent_Identity=50.5747126436782, Blast_Score=186, Evalue=9e-48,
Organism=Escherichia coli, GI87082382, Length=177, Percent_Identity=48.5875706214689, Blast_Score=170, Evalue=6e-44,
Organism=Caenorhabditis elegans, GI17557752, Length=181, Percent_Identity=44.7513812154696, Blast_Score=159, Evalue=9e-40,
Organism=Saccharomyces cerevisiae, GI6323088, Length=176, Percent_Identity=42.0454545454545, Blast_Score=134, Evalue=8e-33,
Organism=Drosophila melanogaster, GI21355135, Length=175, Percent_Identity=44.5714285714286, Blast_Score=164, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 22721; Mature: 22590

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPRDELVWIDCEMTGLDLGSDKLIEIAALVTDGDLNILGEGVDVVIHADDAALAAMPP
CCCCCCCEEEEEEEEECCCCCCCHHEEEEEEEECCCCEEEECCEEEEEECCCCHHHHCCC
VVADMHAKSGLTKEVRTSVVTLQEAEAMVLDYIRQHVASAKTAPLAGNSIATDRGFIARD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCC
MPELDAFLHYRMIDVSSIKELCRRWYPRIYFGQPDKGLAHRALADIKESIRELRYYRRAA
CHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC
FVPDPGPSTSDLVAIVADLDNAPDTDSA
CCCCCCCCHHHHEEEEECCCCCCCCCCC
>Mature Secondary Structure 
SAPRDELVWIDCEMTGLDLGSDKLIEIAALVTDGDLNILGEGVDVVIHADDAALAAMPP
CCCCCCEEEEEEEEECCCCCCCHHEEEEEEEECCCCEEEECCEEEEEECCCCHHHHCCC
VVADMHAKSGLTKEVRTSVVTLQEAEAMVLDYIRQHVASAKTAPLAGNSIATDRGFIARD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCC
MPELDAFLHYRMIDVSSIKELCRRWYPRIYFGQPDKGLAHRALADIKESIRELRYYRRAA
CHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC
FVPDPGPSTSDLVAIVADLDNAPDTDSA
CCCCCCCCHHHHEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA