Click here to switch to the map view.

The map label for this gene is ypfJ [C]

Identifier: 169628557

GI number: 169628557

Start: 1474265

End: 1475719

Strand: Reverse

Name: ypfJ [C]

Synonym: MAB_1466c

Alternate gene names: 169628557

Gene position: 1475719-1474265 (Counterclockwise)

Preceding gene: 169628558

Following gene: 169628553

Centisome position: 29.12

GC content: 63.78

Gene sequence:

>1455_bases
ATGTCCAAACGCTGGGTAGCACTGTTGGTGGGATTGGTGCTGGTCATCACGTCGTGTGGGCGCCCGCTCGGTGGGCAAGC
TCAGTCGATCTACGCCGATCCCCTGCGGGTCGCGGGCATGCCGGCGGTCGACGGCCCATCGGGCATGAAGCCCGGAGTCC
AGGTGCCCAAGCGCAAGATCGAGAACACCGACAACGGTGAGATCGACGATTACGTCAAGGTGTCCCTGGCCGATATCGAG
GACTTCTGGACGCAGTTCTATGGAGATTCGTTCGCGAATTTCCGGCCCGTGTCCCGGCTCATCTCGGTCGACTCGCGCAA
GAACAACGACGACCTCGAATTCTGCAGGGGCAACCTGACCGACTTCATCAACGCCGCGTTCTGCCCGTTGGACAACTCGT
TCGCATGGGATCGCGGACAGCTGTTCCCGTTCCTGCGCAAGCAGATGGGCGATATGGCGATGAACACCGTGATGGCGCAC
GAGTACGGACACTCGATCCAGTTCCACGCCCAACTCATCAACCCGATCGACGATCCGAAAATGAGCAGGGACCAGGTCGA
GTACCTGATGGACCTCAATCAGGAACAACAGGCGGACTGTTTCGCCGGGTCCTATCTGCGCTGGGTCACCCAGGGCGATT
CACCCCGCTTTACCCTCAACACCGCCGATGGGCTCAACAAGGTGATGGCCGCGATGATCGCGATCCGCGACAACGACACC
AGCAAGAAATGGGCCATCCACGGCTCGGCATTTGAGCGCGTGTCGGCCTTCCAGTTCGGTTTCACCGACGGCCCCATGGC
GTGCAAGCGCATCGACTCCCAGGAGATCATCAAGCGCCGCGGCGAGCTGCCCCGCGGTCTGGGCGTGGGCCCCAACGGCG
ACAACTGGCCCATCAACCCGGACACCATCGGCGCGGTGCTGGCCGCGGCCTCGCAGGTGTTTCCCATGGACAATCCGCCC
AAGGCCGTCTACGGGGACGGGAAATGTTCCGACGGTTCGGGCACAGCACCGGCGTCGTACTGCCCCAAGGACAACACCAT
CGCGCTGGATCCCCAGGCGCTACAGAAGATGGCCAAACCTGCGACGGACCGTGCCCTGTTCTCCGCGCAGGTGAATGGCG
ACTACTCGGCGTTCAGCGTGATCGTCTCGCGCTACGCGCTGGCGGCGCAGAAGGCCGCCGGGCTGGAGACCGAGGGCATC
ATGACCGGGCTGCGCACTGCCTGCCTAACGGGGTACTTCACGTCACGTGCGGCGGGCAAGGGCATCGTGACCCCGCGCGC
ACCGGTCATCCTGTCCGGCGGCGACCTCGATGAGGCGGTCTCCGAATTGCTGTCCAGCGGTAGAGCTTCCAGCGATGTGA
ACGGTGAAACGGCGCCGGCGGGCTTCTCCCGCATCGACGCCTACCGGATCGGCGTACTGGGCAACGACCAGACCTGCGCC
AAGCGCTTCCCCTAG

Upstream 100 bases:

>100_bases
CGCCGGCCGCTGCCATCTGGCTAGAACCCGTCTCGGACCGTCTCTAGAAAACATTAGGATGCGCTAAACGCACGCTCGCG
TATTTCAAAGGGGTGGCTTG

Downstream 100 bases:

>100_bases
CTCCTAACCGGCACGGGCGAAAAGGTCAGAACAGGGCGTTGGCGAGCTTGCGGCGTCCAGCGATCACGGCGGGATCGGCG
GGATCGAACAGCTCGAACAA

Product: lipoprotein peptidase LpqM

Products: NA

Alternate protein names: LpqM Protein; Metalloprotease; Metalloprotease-Like Protein; Metallopeptidase; Neutral Zinc Metallopeptidase; Aminopeptidase; Lipoprotein

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MSKRWVALLVGLVLVITSCGRPLGGQAQSIYADPLRVAGMPAVDGPSGMKPGVQVPKRKIENTDNGEIDDYVKVSLADIE
DFWTQFYGDSFANFRPVSRLISVDSRKNNDDLEFCRGNLTDFINAAFCPLDNSFAWDRGQLFPFLRKQMGDMAMNTVMAH
EYGHSIQFHAQLINPIDDPKMSRDQVEYLMDLNQEQQADCFAGSYLRWVTQGDSPRFTLNTADGLNKVMAAMIAIRDNDT
SKKWAIHGSAFERVSAFQFGFTDGPMACKRIDSQEIIKRRGELPRGLGVGPNGDNWPINPDTIGAVLAAASQVFPMDNPP
KAVYGDGKCSDGSGTAPASYCPKDNTIALDPQALQKMAKPATDRALFSAQVNGDYSAFSVIVSRYALAAQKAAGLETEGI
MTGLRTACLTGYFTSRAAGKGIVTPRAPVILSGGDLDEAVSELLSSGRASSDVNGETAPAGFSRIDAYRIGVLGNDQTCA
KRFP

Sequences:

>Translated_484_residues
MSKRWVALLVGLVLVITSCGRPLGGQAQSIYADPLRVAGMPAVDGPSGMKPGVQVPKRKIENTDNGEIDDYVKVSLADIE
DFWTQFYGDSFANFRPVSRLISVDSRKNNDDLEFCRGNLTDFINAAFCPLDNSFAWDRGQLFPFLRKQMGDMAMNTVMAH
EYGHSIQFHAQLINPIDDPKMSRDQVEYLMDLNQEQQADCFAGSYLRWVTQGDSPRFTLNTADGLNKVMAAMIAIRDNDT
SKKWAIHGSAFERVSAFQFGFTDGPMACKRIDSQEIIKRRGELPRGLGVGPNGDNWPINPDTIGAVLAAASQVFPMDNPP
KAVYGDGKCSDGSGTAPASYCPKDNTIALDPQALQKMAKPATDRALFSAQVNGDYSAFSVIVSRYALAAQKAAGLETEGI
MTGLRTACLTGYFTSRAAGKGIVTPRAPVILSGGDLDEAVSELLSSGRASSDVNGETAPAGFSRIDAYRIGVLGNDQTCA
KRFP
>Mature_483_residues
SKRWVALLVGLVLVITSCGRPLGGQAQSIYADPLRVAGMPAVDGPSGMKPGVQVPKRKIENTDNGEIDDYVKVSLADIED
FWTQFYGDSFANFRPVSRLISVDSRKNNDDLEFCRGNLTDFINAAFCPLDNSFAWDRGQLFPFLRKQMGDMAMNTVMAHE
YGHSIQFHAQLINPIDDPKMSRDQVEYLMDLNQEQQADCFAGSYLRWVTQGDSPRFTLNTADGLNKVMAAMIAIRDNDTS
KKWAIHGSAFERVSAFQFGFTDGPMACKRIDSQEIIKRRGELPRGLGVGPNGDNWPINPDTIGAVLAAASQVFPMDNPPK
AVYGDGKCSDGSGTAPASYCPKDNTIALDPQALQKMAKPATDRALFSAQVNGDYSAFSVIVSRYALAAQKAAGLETEGIM
TGLRTACLTGYFTSRAAGKGIVTPRAPVILSGGDLDEAVSELLSSGRASSDVNGETAPAGFSRIDAYRIGVLGNDQTCAK
RFP

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52392; Mature: 52260

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRWVALLVGLVLVITSCGRPLGGQAQSIYADPLRVAGMPAVDGPSGMKPGVQVPKRKI
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHEECCCHHHCCCCCCCCCCCCCCCCHHHHHHC
ENTDNGEIDDYVKVSLADIEDFWTQFYGDSFANFRPVSRLISVDSRKNNDDLEFCRGNLT
CCCCCCCCCCHHEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCHH
DFINAAFCPLDNSFAWDRGQLFPFLRKQMGDMAMNTVMAHEYGHSIQFHAQLINPIDDPK
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCC
MSRDQVEYLMDLNQEQQADCFAGSYLRWVTQGDSPRFTLNTADGLNKVMAAMIAIRDNDT
CCHHHHHHHHHCCCHHHHHHHHHHHHHEEECCCCCCEEEECHHHHHHHHHHHHHHCCCCC
SKKWAIHGSAFERVSAFQFGFTDGPMACKRIDSQEIIKRRGELPRGLGVGPNGDNWPINP
CCEEEECCHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCH
DTIGAVLAAASQVFPMDNPPKAVYGDGKCSDGSGTAPASYCPKDNTIALDPQALQKMAKP
HHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCC
ATDRALFSAQVNGDYSAFSVIVSRYALAAQKAAGLETEGIMTGLRTACLTGYFTSRAAGK
CHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
GIVTPRAPVILSGGDLDEAVSELLSSGRASSDVNGETAPAGFSRIDAYRIGVLGNDQTCA
CCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCEEEEEEECCCCHHH
KRFP
HCCC
>Mature Secondary Structure 
SKRWVALLVGLVLVITSCGRPLGGQAQSIYADPLRVAGMPAVDGPSGMKPGVQVPKRKI
CCHHHHHHHHHHHHHHHCCCCCCCCCHHEECCCHHHCCCCCCCCCCCCCCCCHHHHHHC
ENTDNGEIDDYVKVSLADIEDFWTQFYGDSFANFRPVSRLISVDSRKNNDDLEFCRGNLT
CCCCCCCCCCHHEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCHH
DFINAAFCPLDNSFAWDRGQLFPFLRKQMGDMAMNTVMAHEYGHSIQFHAQLINPIDDPK
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCC
MSRDQVEYLMDLNQEQQADCFAGSYLRWVTQGDSPRFTLNTADGLNKVMAAMIAIRDNDT
CCHHHHHHHHHCCCHHHHHHHHHHHHHEEECCCCCCEEEECHHHHHHHHHHHHHHCCCCC
SKKWAIHGSAFERVSAFQFGFTDGPMACKRIDSQEIIKRRGELPRGLGVGPNGDNWPINP
CCEEEECCHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCH
DTIGAVLAAASQVFPMDNPPKAVYGDGKCSDGSGTAPASYCPKDNTIALDPQALQKMAKP
HHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCC
ATDRALFSAQVNGDYSAFSVIVSRYALAAQKAAGLETEGIMTGLRTACLTGYFTSRAAGK
CHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
GIVTPRAPVILSGGDLDEAVSELLSSGRASSDVNGETAPAGFSRIDAYRIGVLGNDQTCA
CCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCEEEEEEECCCCHHH
KRFP
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA