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The map label for this gene is ybiH [H]

Identifier: 169628491

GI number: 169628491

Start: 1400666

End: 1401253

Strand: Direct

Name: ybiH [H]

Synonym: MAB_1400

Alternate gene names: 169628491

Gene position: 1400666-1401253 (Clockwise)

Preceding gene: 169628490

Following gene: 169628494

Centisome position: 27.64

GC content: 66.67

Gene sequence:

>588_bases
ATGGCGTCGGCTGAAGCCACCCGGGCGCGTCTCGTCACTGCGGGGCTCGCTCTATTCGCCGAGCATGGACTCGAGGGTGT
CCGTACCCGCGCCCTGGCACAGGCGGCAGGGGTGAATCAATCCGCGATCCCGTACCACTTCGGTGGCAAGGAAGGTGTTT
ATGCCGCGGTGATCGACCATCTCGTGTCTGAGCTCAGTGAGGCGGCGGGTCCGCCGGGCGACATGCTTCTCGCCGAGCTC
ATGGAGCGGTTTACCCGGGCGATCCTGCACGGCGCGCAGGCCAGGGACCGGATTCTGCTCATCGCGCGCGAACAGCTCAA
TCCGACAACGCATTACGACCGCTTGTTCGCCGGGTTCGTCGAGCCCACGCATCGGGAAATCTGTGTGCTGGTGGCCCGGG
CCACCGGGGCATCGGCCGACGACCACCTCACGATCATCAAGGCGCACGCGGTGATCGGCCAGGCTCTGGGATTCGCGGTG
GCCCAGACGACCTACTTGCGCCGGGTGCGGCGTACGCGCCTGTCGGCGGAGGATATCGATCTCATCGCGGGGGTGGTGGG
CGAGATGAGCCGAAAGGCCCTGCGGTAG

Upstream 100 bases:

>100_bases
GGATTTGGGAGGCGTCTGGCCAATCTCGGAGGAACCGTGTTGGTGGGTACCGACCGAGGGCTGGAATTGAACGGTAATTC
GACCAGGTTGATGTGGGCCG

Downstream 100 bases:

>100_bases
CGGCTTGTTACGAGAAGGTCTTATCGGGGCTCAGTGCCAGGAATGCCCCAAGCTCTACCAGCCCGTCGGGTGTCGTGGGC
AGATACTCGGTCAGTGCCGG

Product: transcriptional regulator TetR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MASAEATRARLVTAGLALFAEHGLEGVRTRALAQAAGVNQSAIPYHFGGKEGVYAAVIDHLVSELSEAAGPPGDMLLAEL
MERFTRAILHGAQARDRILLIAREQLNPTTHYDRLFAGFVEPTHREICVLVARATGASADDHLTIIKAHAVIGQALGFAV
AQTTYLRRVRRTRLSAEDIDLIAGVVGEMSRKALR

Sequences:

>Translated_195_residues
MASAEATRARLVTAGLALFAEHGLEGVRTRALAQAAGVNQSAIPYHFGGKEGVYAAVIDHLVSELSEAAGPPGDMLLAEL
MERFTRAILHGAQARDRILLIAREQLNPTTHYDRLFAGFVEPTHREICVLVARATGASADDHLTIIKAHAVIGQALGFAV
AQTTYLRRVRRTRLSAEDIDLIAGVVGEMSRKALR
>Mature_194_residues
ASAEATRARLVTAGLALFAEHGLEGVRTRALAQAAGVNQSAIPYHFGGKEGVYAAVIDHLVSELSEAAGPPGDMLLAELM
ERFTRAILHGAQARDRILLIAREQLNPTTHYDRLFAGFVEPTHREICVLVARATGASADDHLTIIKAHAVIGQALGFAVA
QTTYLRRVRRTRLSAEDIDLIAGVVGEMSRKALR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=198, Percent_Identity=31.8181818181818, Blast_Score=91, Evalue=5e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20987; Mature: 20856

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASAEATRARLVTAGLALFAEHGLEGVRTRALAQAAGVNQSAIPYHFGGKEGVYAAVIDH
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHH
LVSELSEAAGPPGDMLLAELMERFTRAILHGAQARDRILLIAREQLNPTTHYDRLFAGFV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCCCHHHHHHHHHHC
EPTHREICVLVARATGASADDHLTIIKAHAVIGQALGFAVAQTTYLRRVRRTRLSAEDID
CCCCHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LIAGVVGEMSRKALR
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASAEATRARLVTAGLALFAEHGLEGVRTRALAQAAGVNQSAIPYHFGGKEGVYAAVIDH
CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHH
LVSELSEAAGPPGDMLLAELMERFTRAILHGAQARDRILLIAREQLNPTTHYDRLFAGFV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCCCHHHHHHHHHHC
EPTHREICVLVARATGASADDHLTIIKAHAVIGQALGFAVAQTTYLRRVRRTRLSAEDID
CCCCHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LIAGVVGEMSRKALR
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]