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The map label for this gene is glcD [C]

Identifier: 169628489

GI number: 169628489

Start: 1397979

End: 1399307

Strand: Reverse

Name: glcD [C]

Synonym: MAB_1398c

Alternate gene names: 169628489

Gene position: 1399307-1397979 (Counterclockwise)

Preceding gene: 169628492

Following gene: 169628488

Centisome position: 27.62

GC content: 65.76

Gene sequence:

>1329_bases
ATGTCTACGCTCGCTCGCGCCCTGGTCCAGATCGTCGGCGAGAGATACGTCAGCACGGACGCCGATGTCCTGGCGGGACG
AACCATCGATCACACCGGGCGCTATCTCGGGACTGCGAGCATCCTGATCCGGCCCGGAACCGCCGAGGAAGTCGCCGAGA
TCCTGAAGGTCTGCAAGGAACGCAGCCAAGCCGTCACCACCCAGGGCGGGCGTACTTCAATGGTCGCCGGCACGGTCAGC
GAGCACGATGACGTACTGCTGTCCACCGAGCGGCTCACCGAGATCGGCCCTATCGACACGGTCGAACGCCGCGTCCGCGC
CGGATCCGGTGTCACCCTGGCCGCGTTGCAACAGGCCGCCGCCAAGGAGAACCTGCAGTTCGGTGTCGACATCGGTTCGC
GCGACTCCGCCACCCTCGGTGGGATGGCATCCACCAATGCGGGGGGCTTGCGTACGGTGCGCTACGGAAACATGCGCGAA
CAAGTCATCGGAATTCAAGTCGCACTGCCCGATGGTTCAATCATGGAGCGCCACAGCGATGTTCGTGCCGACAACACAGG
CTACGATCTGACCAGCCTGTTTGTCGGCGCCGAGGGCACCCTGGGTGTCATCACCGCACTCGAGCTGCGTCTACACCCGG
TGCCCACACACAGCGTCGCCGCCCTCACCGGGTTCGACAGCCTGGATCGACTTGTCGAGGCCAGCCGTATCTTCCGGGAT
CTGGACGGCATCGCCGCGCTGGAGCTCATGGATTCCAGGCTGGGCGTCCCAAGCCCCCTCGACAACCCCTGGCTGCTGCT
CATCGAACTCGCGCGCGACAGCGACCCCACCGACGATCTGGCCGAGGCGCTCGAGGCCGCCGGGGTGGCCGAGCACGCCG
CCGTCGGCCTGGACAGCACCTCGCGTGAACGCCTATGGCAGGTACGCGAATCCGTCGCAGAGGCGCTGGGCACCTACGGC
CCGCCGCTGAAATTCGATGTGGCGCTGCCGCTGGCGCACATCGGCGAGTTCGAACGACGTGCCTCCGAGCTGATCGCCGC
CGCGGTGCCCGGGGCCATGCCCGTGCTGTTCGGCCACGTAGGCGAGGGCAATCTACACTTAAATGTGTTGCGCTGTCCCG
ACTCCACCACGTTGTATCAGCCCATGATGACGCTGATCGCGGATCTAGGCGGCAATGTCAGTTCCGAGCACGGGGTCGGC
ACTCTCAAACGCGACTACCTCGGCATGGCGCGCACCGCCGGCGATATCGCCGCGATGCGGGCCGTCAAGTCCGCGTTCGA
TCCCACAGGGTTTCTGAACCCCGCGGTGCTGTTCGGCCCGGAATCATGA

Upstream 100 bases:

>100_bases
CGCAGAGGACATACCACTAGACCATAATTCATTCATTTGAATGAATTCAAGGCGTCGGTAGAATCCCCCGAAGCGCGATG
TGGATGCCACACTGGGGTCC

Downstream 100 bases:

>100_bases
CACTCGTCGTCGACCCCGAGACATTCAGCCGGGAGTGGTTCGCGGCGTGGAACGCCCACGACATCGAGGCGGTCCTGGCG
GCCGACGCCCTGACCCGCAA

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MSTLARALVQIVGERYVSTDADVLAGRTIDHTGRYLGTASILIRPGTAEEVAEILKVCKERSQAVTTQGGRTSMVAGTVS
EHDDVLLSTERLTEIGPIDTVERRVRAGSGVTLAALQQAAAKENLQFGVDIGSRDSATLGGMASTNAGGLRTVRYGNMRE
QVIGIQVALPDGSIMERHSDVRADNTGYDLTSLFVGAEGTLGVITALELRLHPVPTHSVAALTGFDSLDRLVEASRIFRD
LDGIAALELMDSRLGVPSPLDNPWLLLIELARDSDPTDDLAEALEAAGVAEHAAVGLDSTSRERLWQVRESVAEALGTYG
PPLKFDVALPLAHIGEFERRASELIAAAVPGAMPVLFGHVGEGNLHLNVLRCPDSTTLYQPMMTLIADLGGNVSSEHGVG
TLKRDYLGMARTAGDIAAMRAVKSAFDPTGFLNPAVLFGPES

Sequences:

>Translated_442_residues
MSTLARALVQIVGERYVSTDADVLAGRTIDHTGRYLGTASILIRPGTAEEVAEILKVCKERSQAVTTQGGRTSMVAGTVS
EHDDVLLSTERLTEIGPIDTVERRVRAGSGVTLAALQQAAAKENLQFGVDIGSRDSATLGGMASTNAGGLRTVRYGNMRE
QVIGIQVALPDGSIMERHSDVRADNTGYDLTSLFVGAEGTLGVITALELRLHPVPTHSVAALTGFDSLDRLVEASRIFRD
LDGIAALELMDSRLGVPSPLDNPWLLLIELARDSDPTDDLAEALEAAGVAEHAAVGLDSTSRERLWQVRESVAEALGTYG
PPLKFDVALPLAHIGEFERRASELIAAAVPGAMPVLFGHVGEGNLHLNVLRCPDSTTLYQPMMTLIADLGGNVSSEHGVG
TLKRDYLGMARTAGDIAAMRAVKSAFDPTGFLNPAVLFGPES
>Mature_441_residues
STLARALVQIVGERYVSTDADVLAGRTIDHTGRYLGTASILIRPGTAEEVAEILKVCKERSQAVTTQGGRTSMVAGTVSE
HDDVLLSTERLTEIGPIDTVERRVRAGSGVTLAALQQAAAKENLQFGVDIGSRDSATLGGMASTNAGGLRTVRYGNMREQ
VIGIQVALPDGSIMERHSDVRADNTGYDLTSLFVGAEGTLGVITALELRLHPVPTHSVAALTGFDSLDRLVEASRIFRDL
DGIAALELMDSRLGVPSPLDNPWLLLIELARDSDPTDDLAEALEAAGVAEHAAVGLDSTSRERLWQVRESVAEALGTYGP
PLKFDVALPLAHIGEFERRASELIAAAVPGAMPVLFGHVGEGNLHLNVLRCPDSTTLYQPMMTLIADLGGNVSSEHGVGT
LKRDYLGMARTAGDIAAMRAVKSAFDPTGFLNPAVLFGPES

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=439, Percent_Identity=33.7129840546697, Blast_Score=241, Evalue=1e-63,
Organism=Homo sapiens, GI37595756, Length=455, Percent_Identity=29.8901098901099, Blast_Score=167, Evalue=3e-41,
Organism=Homo sapiens, GI37595754, Length=478, Percent_Identity=28.6610878661088, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI4501993, Length=218, Percent_Identity=26.605504587156, Blast_Score=83, Evalue=4e-16,
Organism=Escherichia coli, GI1789351, Length=452, Percent_Identity=30.0884955752212, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI1787977, Length=496, Percent_Identity=24.3951612903226, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI48994907, Length=499, Percent_Identity=22.2444889779559, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17534361, Length=449, Percent_Identity=30.7349665924276, Blast_Score=216, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI71992373, Length=459, Percent_Identity=28.5403050108932, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI71992381, Length=458, Percent_Identity=27.9475982532751, Blast_Score=144, Evalue=6e-35,
Organism=Caenorhabditis elegans, GI71992392, Length=351, Percent_Identity=29.0598290598291, Blast_Score=125, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17556096, Length=179, Percent_Identity=27.3743016759777, Blast_Score=80, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6320023, Length=449, Percent_Identity=32.0712694877506, Blast_Score=243, Evalue=5e-65,
Organism=Saccharomyces cerevisiae, GI6320764, Length=443, Percent_Identity=31.3769751693002, Blast_Score=224, Evalue=2e-59,
Organism=Saccharomyces cerevisiae, GI6320027, Length=477, Percent_Identity=26.8343815513627, Blast_Score=154, Evalue=3e-38,
Organism=Drosophila melanogaster, GI18921117, Length=453, Percent_Identity=32.8918322295806, Blast_Score=229, Evalue=4e-60,
Organism=Drosophila melanogaster, GI24639277, Length=453, Percent_Identity=32.8918322295806, Blast_Score=229, Evalue=4e-60,
Organism=Drosophila melanogaster, GI24639275, Length=453, Percent_Identity=32.8918322295806, Blast_Score=229, Evalue=4e-60,
Organism=Drosophila melanogaster, GI24653753, Length=217, Percent_Identity=24.8847926267281, Blast_Score=75, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 46811; Mature: 46679

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLARALVQIVGERYVSTDADVLAGRTIDHTGRYLGTASILIRPGTAEEVAEILKVCKE
CCHHHHHHHHHHHHHHCCCCCHHHCCCCHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHH
RSQAVTTQGGRTSMVAGTVSEHDDVLLSTERLTEIGPIDTVERRVRAGSGVTLAALQQAA
HHHHEECCCCCEEEEEECCCCCCCEEEEHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH
AKENLQFGVDIGSRDSATLGGMASTNAGGLRTVRYGNMREQVIGIQVALPDGSIMERHSD
HHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHEEEEEEEECCCCHHHHHHHC
VRADNTGYDLTSLFVGAEGTLGVITALELRLHPVPTHSVAALTGFDSLDRLVEASRIFRD
CCCCCCCCCHHHEEECCCCCHHHEEEEEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHH
LDGIAALELMDSRLGVPSPLDNPWLLLIELARDSDPTDDLAEALEAAGVAEHAAVGLDST
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHCCCCCC
SRERLWQVRESVAEALGTYGPPLKFDVALPLAHIGEFERRASELIAAAVPGAMPVLFGHV
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHEEEC
GEGNLHLNVLRCPDSTTLYQPMMTLIADLGGNVSSEHGVGTLKRDYLGMARTAGDIAAMR
CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AVKSAFDPTGFLNPAVLFGPES
HHHHHCCCCCCCCCEEEECCCC
>Mature Secondary Structure 
STLARALVQIVGERYVSTDADVLAGRTIDHTGRYLGTASILIRPGTAEEVAEILKVCKE
CHHHHHHHHHHHHHHCCCCCHHHCCCCHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHH
RSQAVTTQGGRTSMVAGTVSEHDDVLLSTERLTEIGPIDTVERRVRAGSGVTLAALQQAA
HHHHEECCCCCEEEEEECCCCCCCEEEEHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH
AKENLQFGVDIGSRDSATLGGMASTNAGGLRTVRYGNMREQVIGIQVALPDGSIMERHSD
HHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHEEEEEEEECCCCHHHHHHHC
VRADNTGYDLTSLFVGAEGTLGVITALELRLHPVPTHSVAALTGFDSLDRLVEASRIFRD
CCCCCCCCCHHHEEECCCCCHHHEEEEEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHH
LDGIAALELMDSRLGVPSPLDNPWLLLIELARDSDPTDDLAEALEAAGVAEHAAVGLDST
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHCCCCCC
SRERLWQVRESVAEALGTYGPPLKFDVALPLAHIGEFERRASELIAAAVPGAMPVLFGHV
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHEEEC
GEGNLHLNVLRCPDSTTLYQPMMTLIADLGGNVSSEHGVGTLKRDYLGMARTAGDIAAMR
CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AVKSAFDPTGFLNPAVLFGPES
HHHHHCCCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]