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The map label for this gene is opuBB [H]

Identifier: 169628318

GI number: 169628318

Start: 1237251

End: 1237898

Strand: Direct

Name: opuBB [H]

Synonym: MAB_1225

Alternate gene names: 169628318

Gene position: 1237251-1237898 (Clockwise)

Preceding gene: 169628317

Following gene: 169628319

Centisome position: 24.42

GC content: 62.04

Gene sequence:

>648_bases
ATGGGTTTTGTCGAGTTTGTGAAGGACCGCTGGGCGGTCCTGTCCTTTCTCGCCTATCAGCACATGAGTCTGGTCCTGCA
AACGCTGGTTGTCGCGGCCATGTGTGCCGTCTTTCTTGGGGTGCTGATCTACCGGTCGCCTTGGGGTGTGGCCAGCGGTA
ATGCGCTGGCCGCCATCGGCCTGACAATCCCCTCGTACGCCCTGCTGGGAGTGTTGGTCGGCGTCGTCGGTATCGGTGTT
TCGCCGTCGGTCATCATGCTGGTCTTCTTCGGCAGTCTGCCGATTCTGCGCAATGTGTTGGTGGGGTTGACCGGCGTTGA
TCAAACACTCGTCGAGTCCGCTCGCGGGATGGGCATGAGCCGACTGGCAACGCTGGTGCGGTTGGAGCTGCCGTTGGCGT
GGCCGGTGATCATGACCGGCATCCGGGTATCGGCGCAGATGTTGATGGGTACCGCGGCAATCGCTGCGTTCGCGCTCGGA
CCGGGCCTGGGCGGATACATCTTCTCCGGTATCTCGCGCATGGGCGGCGCGAACGCGACCAACTCCGTTATCGCCGGCAC
GGTCGGCATTCTCATTTTGGCGGTGATTCTCGACTCGGTGCTCAACGTCGTTACCCGCCTCACGACACCAAGGGGGATCC
GTGTCTGA

Upstream 100 bases:

>100_bases
AAAAGTAGCCTCCGGGGCCGTCATTGACATATGGTGGGTTGGCGGTGCCCGGTGAGAGCGGGTGTCGGTATCTGTTTTCT
ATGGAGGCACCAGCGGATTT

Downstream 100 bases:

>100_bases
CGTAACGGAAAACGCAACCATCACCGGCGGTGCGCGCATCCTGCTGGACGGTGTGACCAAGCTATATGACGGAAAGTCCA
CTCCAGCAGTCGACAACGTG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MGFVEFVKDRWAVLSFLAYQHMSLVLQTLVVAAMCAVFLGVLIYRSPWGVASGNALAAIGLTIPSYALLGVLVGVVGIGV
SPSVIMLVFFGSLPILRNVLVGLTGVDQTLVESARGMGMSRLATLVRLELPLAWPVIMTGIRVSAQMLMGTAAIAAFALG
PGLGGYIFSGISRMGGANATNSVIAGTVGILILAVILDSVLNVVTRLTTPRGIRV

Sequences:

>Translated_215_residues
MGFVEFVKDRWAVLSFLAYQHMSLVLQTLVVAAMCAVFLGVLIYRSPWGVASGNALAAIGLTIPSYALLGVLVGVVGIGV
SPSVIMLVFFGSLPILRNVLVGLTGVDQTLVESARGMGMSRLATLVRLELPLAWPVIMTGIRVSAQMLMGTAAIAAFALG
PGLGGYIFSGISRMGGANATNSVIAGTVGILILAVILDSVLNVVTRLTTPRGIRV
>Mature_214_residues
GFVEFVKDRWAVLSFLAYQHMSLVLQTLVVAAMCAVFLGVLIYRSPWGVASGNALAAIGLTIPSYALLGVLVGVVGIGVS
PSVIMLVFFGSLPILRNVLVGLTGVDQTLVESARGMGMSRLATLVRLELPLAWPVIMTGIRVSAQMLMGTAAIAAFALGP
GLGGYIFSGISRMGGANATNSVIAGTVGILILAVILDSVLNVVTRLTTPRGIRV

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=205, Percent_Identity=36.0975609756098, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1788451, Length=204, Percent_Identity=31.3725490196078, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789033, Length=176, Percent_Identity=34.0909090909091, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22328; Mature: 22197

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFVEFVKDRWAVLSFLAYQHMSLVLQTLVVAAMCAVFLGVLIYRSPWGVASGNALAAIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHH
LTIPSYALLGVLVGVVGIGVSPSVIMLVFFGSLPILRNVLVGLTGVDQTLVESARGMGMS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHH
RLATLVRLELPLAWPVIMTGIRVSAQMLMGTAAIAAFALGPGLGGYIFSGISRMGGANAT
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
NSVIAGTVGILILAVILDSVLNVVTRLTTPRGIRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GFVEFVKDRWAVLSFLAYQHMSLVLQTLVVAAMCAVFLGVLIYRSPWGVASGNALAAIG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHH
LTIPSYALLGVLVGVVGIGVSPSVIMLVFFGSLPILRNVLVGLTGVDQTLVESARGMGMS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHH
RLATLVRLELPLAWPVIMTGIRVSAQMLMGTAAIAAFALGPGLGGYIFSGISRMGGANAT
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
NSVIAGTVGILILAVILDSVLNVVTRLTTPRGIRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]