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The map label for this gene is rutD [H]

Identifier: 169628262

GI number: 169628262

Start: 1185182

End: 1186060

Strand: Direct

Name: rutD [H]

Synonym: MAB_1169

Alternate gene names: 169628262

Gene position: 1185182-1186060 (Clockwise)

Preceding gene: 169628261

Following gene: 169628263

Centisome position: 23.39

GC content: 65.3

Gene sequence:

>879_bases
ATGTCGAAGGCCGAAGTACGCGAAATCGGCGTTTCGGAGACGGGTTTCGTCCGGCGGCCCGACCCCGATGGGGCCGCGGT
CGCTTACCGCACCTATGGGCGTTCCCGGCCCGGTGTGGTCGACGTCGTGCTGGTGCACGGCAGCTTGCAGAACTCGGCGG
TGTGGTCCAAACATGGCTACATCGCGCAGCTGTCTCAGCAGTACCGGGTGACCACCATCGATGTGCGCGGCCACGGCGCC
AGTGAGAAGCCGGACCACCCGGGTGGGTATGCCATCGCGTCCTCGGCGCGGGACGTCTGTGCCGTGCTGGACCATCTGCA
GGTGCATCAGGCGCACTACCTCGGGTACTCGTTGGGCGGTCGAATCGGTCTGACCCTGGCGGCCACTGCGCCCGAGCGCC
TCACCTCGTTGGTGGTGGCAGGTTCCTCGCACCGCCCGCAGCGTGGTGCGGTGGATGTCTTGATCTTCCCGAATGCCATT
CGCGTGGTAGAAGAATCGGGGCTCCCCGCCTTCATCGACGGTTGGGAATCGCATCGCGGGCAACGCATGGCGTCGGGTTT
CCGGGCGACGATCGAGGCATTAGGGCAACGCGGACTGGCTGCCTTGCTGCGTCAGTGGGACGACGAGCCGGGCGTCACCG
AAGAGGCTCTGCTCCAGATCGAGACGCCCACACTGTTTTTCGCAGGCTCCGAGGATCCCATGCGGCTGGCCGAATCGCGG
GAGGCCGCGGTGCGGATGCCGCGTGCGTACTTTGCCCTGTTGGAAGGATGCAATCACGGCCAAACGGTGACGATGCGCGA
GCGGATTCTGGACCGTGCCGAGGCGTTCTTCCGCCTGTCTGAGTTCTCTGATATCGAGAAGCTTCGGGTGGCCGGATGA

Upstream 100 bases:

>100_bases
CTCATAACGGTTGGTTGAAGGGACGCAGCGCCGCGTACGAGCCCGGATCAGCAAATGTTTGATTAGGTGCGGAAGGTTTG
GTTTCCTCGTGTCAACTTCC

Downstream 100 bases:

>100_bases
CCGAGCGCCCCGGAGTGGGGACCCTGGCACGGATCGGCGTGCTGGGTGGTATGTCGGGTGGCCTGCTCGGTGGTGGCACG
GGCGTGATCACCGTTCCGTC

Product: putative hydrolase, alpha/beta fold

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSKAEVREIGVSETGFVRRPDPDGAAVAYRTYGRSRPGVVDVVLVHGSLQNSAVWSKHGYIAQLSQQYRVTTIDVRGHGA
SEKPDHPGGYAIASSARDVCAVLDHLQVHQAHYLGYSLGGRIGLTLAATAPERLTSLVVAGSSHRPQRGAVDVLIFPNAI
RVVEESGLPAFIDGWESHRGQRMASGFRATIEALGQRGLAALLRQWDDEPGVTEEALLQIETPTLFFAGSEDPMRLAESR
EAAVRMPRAYFALLEGCNHGQTVTMRERILDRAEAFFRLSEFSDIEKLRVAG

Sequences:

>Translated_292_residues
MSKAEVREIGVSETGFVRRPDPDGAAVAYRTYGRSRPGVVDVVLVHGSLQNSAVWSKHGYIAQLSQQYRVTTIDVRGHGA
SEKPDHPGGYAIASSARDVCAVLDHLQVHQAHYLGYSLGGRIGLTLAATAPERLTSLVVAGSSHRPQRGAVDVLIFPNAI
RVVEESGLPAFIDGWESHRGQRMASGFRATIEALGQRGLAALLRQWDDEPGVTEEALLQIETPTLFFAGSEDPMRLAESR
EAAVRMPRAYFALLEGCNHGQTVTMRERILDRAEAFFRLSEFSDIEKLRVAG
>Mature_291_residues
SKAEVREIGVSETGFVRRPDPDGAAVAYRTYGRSRPGVVDVVLVHGSLQNSAVWSKHGYIAQLSQQYRVTTIDVRGHGAS
EKPDHPGGYAIASSARDVCAVLDHLQVHQAHYLGYSLGGRIGLTLAATAPERLTSLVVAGSSHRPQRGAVDVLIFPNAIR
VVEESGLPAFIDGWESHRGQRMASGFRATIEALGQRGLAALLRQWDDEPGVTEEALLQIETPTLFFAGSEDPMRLAESRE
AAVRMPRAYFALLEGCNHGQTVTMRERILDRAEAFFRLSEFSDIEKLRVAG

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 31874; Mature: 31743

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAEVREIGVSETGFVRRPDPDGAAVAYRTYGRSRPGVVDVVLVHGSLQNSAVWSKHGY
CCCCHHHHCCCCCCCCEECCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCEEECCCCH
IAQLSQQYRVTTIDVRGHGASEKPDHPGGYAIASSARDVCAVLDHLQVHQAHYLGYSLGG
HHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCEECCC
RIGLTLAATAPERLTSLVVAGSSHRPQRGAVDVLIFPNAIRVVEESGLPAFIDGWESHRG
CEEEEEEECCHHHHHHEEEECCCCCCCCCCEEEEECCCCEEEHHCCCCCCEECCHHHHCC
QRMASGFRATIEALGQRGLAALLRQWDDEPGVTEEALLQIETPTLFFAGSEDPMRLAESR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEECCEEEEECCCCHHHHHHHH
EAAVRMPRAYFALLEGCNHGQTVTMRERILDRAEAFFRLSEFSDIEKLRVAG
HHHHHCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure 
SKAEVREIGVSETGFVRRPDPDGAAVAYRTYGRSRPGVVDVVLVHGSLQNSAVWSKHGY
CCCHHHHCCCCCCCCEECCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCEEECCCCH
IAQLSQQYRVTTIDVRGHGASEKPDHPGGYAIASSARDVCAVLDHLQVHQAHYLGYSLGG
HHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCEECCC
RIGLTLAATAPERLTSLVVAGSSHRPQRGAVDVLIFPNAIRVVEESGLPAFIDGWESHRG
CEEEEEEECCHHHHHHEEEECCCCCCCCCCEEEEECCCCEEEHHCCCCCCEECCHHHHCC
QRMASGFRATIEALGQRGLAALLRQWDDEPGVTEEALLQIETPTLFFAGSEDPMRLAESR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEECCEEEEECCCCHHHHHHHH
EAAVRMPRAYFALLEGCNHGQTVTMRERILDRAEAFFRLSEFSDIEKLRVAG
HHHHHCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA