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The map label for this gene is ycdO [C]

Identifier: 169628255

GI number: 169628255

Start: 1178580

End: 1179734

Strand: Reverse

Name: ycdO [C]

Synonym: MAB_1162c

Alternate gene names: 169628255

Gene position: 1179734-1178580 (Counterclockwise)

Preceding gene: 169628256

Following gene: 169628254

Centisome position: 23.28

GC content: 62.86

Gene sequence:

>1155_bases
ATGAAACCGTCACTTGCCTATGTTGGTGCCGCACTTGCGGTGGCCGCCGGCACCACGCTGGCCGGATGCACTCCCAAGGA
GCCTGCCCAGGGCGGTGCCGCGGGCGGTGGCCAGGAGATCACGGTCACCGCGACCGACTCCAGCTGCCAGCTGTCCAAGA
CCGAGGGAACCACGGGCCCAGTCACTTTCAACGTGACCAACAATGGCTCGAAGGTGACCGAGTTCTACGTCTACGACAAG
GGCGACCGTGCCCTCGGCGAGGTCGAAAACATCGGCTCGGGCATCAGCCGCAAGCTCATCGTGCAGTTCACCGAACCCGG
CACATACCAGACCGCCTGCAAGCCAGGCATGATCGGCGACGGCATCCGCGGCGACCTCACGATCACCGGAGCCGCGGTGA
AACTGGACGCCGAAGGCAAGTTCAAGGACGCCACCGACCGCTACCGCGGCTACGTGATCAGCCAGGTCGACGCCCTGAGC
GAGGCCGCAGCCAAGTTCGTGGCCGCGGTCAAAGCCAAGGACATCGCCTCCGCCAAGGCTCAGTACCCGACCAGCCGCGT
GTACTACGAACGGATCGAGCCGGTGGCCGAAGCCTTCCCGAACGATCTCGACCCACGAATCGACTTGCGCGAGGCCGATC
TTCAGCCCGGCGAGAAATGGACCGGCTATCACCGACTGGAGAAGGACCTGTGGGTGACCGGCCTACAGCCGGACACCAAT
GCGATCGCCGATCAGCTGCTCAAGGACATCAAGGAACTCTCGGACGGAGTGCGGGCCAAGGATTTCGACATCAACACCAC
CAAGATCGCCGGTGGCGCGCAGACTCTGCTCGACGAGGTGGCCAGGACGAAGATCTCGGGCGAGGAAGAGACCTTCAGCC
ACACCGACCTGTGGGACTTCCAGGCCAACCTCGACGGCTCACAGAACGCCGTCGCGACCGTGCGGCCGATTCTCGATGAA
CGCAAGCCTGAACTGGGACAAGCGATCGACAAGCGCTTCAAGGAAGTCGACGCCCTCCTGGGCAAGTACCGCAAGGGCGA
TGGATTCGTCTTCTACGACACGGTGACTCAAGATCAGCGCATCGAATTGGCACATGCCATTGACGCGTTGTCCAAGGAGG
TCAGCGAGGTACAAGGTGTCATCGCCGGACGATGA

Upstream 100 bases:

>100_bases
GGATCATCTATCTGGTGCTCGTGCTCGGCCTGTTCCTGCGCCCGGTGGCCGTCGCGCCCAAGGCCAATACTCCCCAAGCC
CAACCCGAGAGGACCGCTGG

Downstream 100 bases:

>100_bases
GCGGCGTGCACGCAGAGAGCCCAGCGTGAGCACGGGGCTCAACCGCCGCAAGCTGCTGGGCGCGGCAGGAGTCACCGCCG
CCGTCGCCGGAGCCGCCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKPSLAYVGAALAVAAGTTLAGCTPKEPAQGGAAGGGQEITVTATDSSCQLSKTEGTTGPVTFNVTNNGSKVTEFYVYDK
GDRALGEVENIGSGISRKLIVQFTEPGTYQTACKPGMIGDGIRGDLTITGAAVKLDAEGKFKDATDRYRGYVISQVDALS
EAAAKFVAAVKAKDIASAKAQYPTSRVYYERIEPVAEAFPNDLDPRIDLREADLQPGEKWTGYHRLEKDLWVTGLQPDTN
AIADQLLKDIKELSDGVRAKDFDINTTKIAGGAQTLLDEVARTKISGEEETFSHTDLWDFQANLDGSQNAVATVRPILDE
RKPELGQAIDKRFKEVDALLGKYRKGDGFVFYDTVTQDQRIELAHAIDALSKEVSEVQGVIAGR

Sequences:

>Translated_384_residues
MKPSLAYVGAALAVAAGTTLAGCTPKEPAQGGAAGGGQEITVTATDSSCQLSKTEGTTGPVTFNVTNNGSKVTEFYVYDK
GDRALGEVENIGSGISRKLIVQFTEPGTYQTACKPGMIGDGIRGDLTITGAAVKLDAEGKFKDATDRYRGYVISQVDALS
EAAAKFVAAVKAKDIASAKAQYPTSRVYYERIEPVAEAFPNDLDPRIDLREADLQPGEKWTGYHRLEKDLWVTGLQPDTN
AIADQLLKDIKELSDGVRAKDFDINTTKIAGGAQTLLDEVARTKISGEEETFSHTDLWDFQANLDGSQNAVATVRPILDE
RKPELGQAIDKRFKEVDALLGKYRKGDGFVFYDTVTQDQRIELAHAIDALSKEVSEVQGVIAGR
>Mature_384_residues
MKPSLAYVGAALAVAAGTTLAGCTPKEPAQGGAAGGGQEITVTATDSSCQLSKTEGTTGPVTFNVTNNGSKVTEFYVYDK
GDRALGEVENIGSGISRKLIVQFTEPGTYQTACKPGMIGDGIRGDLTITGAAVKLDAEGKFKDATDRYRGYVISQVDALS
EAAAKFVAAVKAKDIASAKAQYPTSRVYYERIEPVAEAFPNDLDPRIDLREADLQPGEKWTGYHRLEKDLWVTGLQPDTN
AIADQLLKDIKELSDGVRAKDFDINTTKIAGGAQTLLDEVARTKISGEEETFSHTDLWDFQANLDGSQNAVATVRPILDE
RKPELGQAIDKRFKEVDALLGKYRKGDGFVFYDTVTQDQRIELAHAIDALSKEVSEVQGVIAGR

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=350, Percent_Identity=38.5714285714286, Blast_Score=219, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 41307; Mature: 41307

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSLAYVGAALAVAAGTTLAGCTPKEPAQGGAAGGGQEITVTATDSSCQLSKTEGTTGP
CCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCC
VTFNVTNNGSKVTEFYVYDKGDRALGEVENIGSGISRKLIVQFTEPGTYQTACKPGMIGD
EEEEEECCCCEEEEEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCC
GIRGDLTITGAAVKLDAEGKFKDATDRYRGYVISQVDALSEAAAKFVAAVKAKDIASAKA
CCCCCEEEEEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYPTSRVYYERIEPVAEAFPNDLDPRIDLREADLQPGEKWTGYHRLEKDLWVTGLQPDTN
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHEEECCCCCHH
AIADQLLKDIKELSDGVRAKDFDINTTKIAGGAQTLLDEVARTKISGEEETFSHTDLWDF
HHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
QANLDGSQNAVATVRPILDERKPELGQAIDKRFKEVDALLGKYRKGDGFVFYDTVTQDQR
ECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH
IELAHAIDALSKEVSEVQGVIAGR
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPSLAYVGAALAVAAGTTLAGCTPKEPAQGGAAGGGQEITVTATDSSCQLSKTEGTTGP
CCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCC
VTFNVTNNGSKVTEFYVYDKGDRALGEVENIGSGISRKLIVQFTEPGTYQTACKPGMIGD
EEEEEECCCCEEEEEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCC
GIRGDLTITGAAVKLDAEGKFKDATDRYRGYVISQVDALSEAAAKFVAAVKAKDIASAKA
CCCCCEEEEEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYPTSRVYYERIEPVAEAFPNDLDPRIDLREADLQPGEKWTGYHRLEKDLWVTGLQPDTN
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHEEECCCCCHH
AIADQLLKDIKELSDGVRAKDFDINTTKIAGGAQTLLDEVARTKISGEEETFSHTDLWDF
HHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
QANLDGSQNAVATVRPILDERKPELGQAIDKRFKEVDALLGKYRKGDGFVFYDTVTQDQR
ECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH
IELAHAIDALSKEVSEVQGVIAGR
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]